New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	3 (0.150)	12 (0.680)	11/252	0.5	80.9%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	3 (0.170)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

GGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGG  >  NC_000913/1207663‑1207937                                                                                                                                               |                                                                                                                                     cattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcctgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg                                                                                                                                      <  1:215229‑M1/16‑1 (MQ=255)  attacgttgtagatatgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaataactggatctattgcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTAGTTTGGGAGAAGGa                                                                                                                                     <  2:309215‑M1/17‑1 (MQ=255)     ccAGCCTGGAGAAGGGGCGGCACGACCAGTTATTTACCTCAGGTCGCGGGCTGCTGTTAAGCCGCAAGAATCCGTTTGTCGATATCAAATCGGATGGCACTTTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa                                                                                                                                  >  2:334048/1‑143 (MQ=17)      cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg                                                                                                                                 <  2:379460‑M1/143‑6 (MQ=255)       ggcCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCACTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGCTATCTGTGTTTTGGTAGAAGGctctgc                                                                                                                                <  2:228294‑M1/142‑7 (MQ=255)       aggctgtAGAGGGGGCGGCACGACCAGTTACTTACCGGACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc                                                                                                                                <  2:345562‑M1/140‑7 (MQ=255)           tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGCAGAAGGgcctgcatta                                                                                                                            >  2:17620‑M1/1‑133 (MQ=255)             gagagtgggCTGTACGACAAGTTACTTACCGCACTTCGCGCGCGGCTGTTAAGCCGCAAGAATCCGTTTGGCGATTTCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                          <  2:177595/137‑1 (MQ=18)                   gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGctatgcagtaccagttgg                                                                                                                    >  2:96110‑M1/1‑125 (MQ=255)                    gtcggcacGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAATCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCACGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                                                                                   <  1:7572‑M1/141‑20 (MQ=255)                                 gttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATtat                                                                                                      <  1:385635‑M1/48‑2 (MQ=255)                                             acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttattcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCATCTACGGCTCAATTAGGACGCAccggct                                                                                          <  2:259031‑M1/60‑3 (MQ=255)                                                        tgctgTTAAGCCGCAAGAATCCGATTGGCGATGGCGAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaaca                                                                               >  2:335348‑M1/1‑88 (MQ=255)                                                              tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgaattacctgatgatgtccagattccgtggccttcagacactacgcaaacagggtgg                                                                         >  1:21855‑M1/1‑82 (MQ=255)                                                                 aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGATTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGCTATg                                                                      <  2:247070‑M1/80‑1 (MQ=255)                                                                                       tatCACATCGGATGGCGCTCTGCATACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGctctgcattacccgttggtgtcccggttccgtggcctttagccactccgccaacaggctggctgaaatgcaatggtgccgcttttt                                                <  2:258163‑M1/143‑87 (MQ=255)                                                                                          ggtgtgatgtgcttgttatttcttcatttgcataagcgTGGGTTTGGTAGAAGGAGCAAAACGCAATGCAGCAACGGCTATATTAGGACGGATCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGTGCAATCAGTaa                                             >  2:245088‑M1/39‑143 (MQ=255)                                                                                                       tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                <  2:42733‑M1/118‑1 (MQ=255)                                                                                                             cAAACGGCTCTCGAAAACCTTGTTTTGGGAGAAGGctctgcattacctgtttttgtcccgtttccttggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaact                          <  1:17620‑M1/143‑109 (MQ=255)                                                                                                                tcgtctctcgaaAACCTTGGTTCGGGAGAAGGctctgcattccctgttggtgtcccggttccgtggccttccgccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggc                       <  2:209185‑M1/139‑112 (MQ=255)                                                                                                                 tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                      <  2:83720‑M1/128‑1 (MQ=255)                                                                                                                   gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaa                    >  1:85245‑M1/1‑29 (MQ=255)                                                                                                                        cataaaCCTTGGTTTGGGTGAAGGAGCAATACTCATTGTAGCAACGGCTATATTATGACGCACCGGTTTCATAGCTATACAGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAg               <  1:105805/140‑1 (MQ=255)                                                                                                                             acgTTGGTGTGGCAGAAGGAGCAAAACTTGCTGCAGCAACGGCGACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAagcagct          >  2:136559‑M1/4‑140 (MQ=255)                                                                                                                               gTTGGTTTTCAAGAAGAAGCAAAACTCAATGCAGTATCTGCTACATTAGGACGCACCGGTTTCATAGCTATAACGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc        >  1:123485‑M1/2‑143 (MQ=255)                                                                                                                               gTTGGTTCGGGAGACGGAGCTAAACTCAATGCAGCACCGGCTACATTAGGACGCGCCGGTTTCATAGCTATACCGGTTATTATTTGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc        >  2:20293‑M1/2‑143 (MQ=255)                                                                                                                                     ttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtggcacataaacagctaaagaataaccggaactggcaaaggctaatccgacacataa  >  1:115966‑M1/1‑11 (MQ=255)                                                                                                                                               |                                                                                                                                     GGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGG  >  NC_000913/1207663‑1207937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.