Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)32 (1.600) 23/284 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)38 (1.900) 23/284 0.0 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTG  >  NC_000913/1979344‑1979628
                                                                                                                                              |                                                                                                                                              
tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcaactacgggagagatattcggcacaaacatgaagaaatgaaataactgagacagccgagaagaatttccccgcttattcgcaacttccc                                                                                                                                                <  1:213609‑M1/1‑1 (MQ=255)
 ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                               >  1:179128‑M1/142‑143 (MQ=255)
 ggggataacgcattaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                               >  2:96391‑M1/142‑143 (MQ=255)
   ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagcaaaaatagactcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                             <  2:127616‑M1/4‑1 (MQ=255)
   ggataacgcctaaaatagcgaagaaacggtctaaataggctgattcaaggaatataaaagaaaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                             >  2:206166‑M1/140‑143 (MQ=255)
     atgtcgccttacatggcggagaaacggtctaaagaggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                           >  2:310394‑M1/138‑143 (MQ=255)
        acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                        >  1:196003‑M1/135‑143 (MQ=255)
              taaatggcgaagaaacggtctaaataggctgattcaaggcatttactggagaaaaaatcggctcaaacatgaagaaaggaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaa                                                                                                                                  >  1:144425‑M1/129‑143 (MQ=255)
               aaatggctaaaaaacggtctaaataggctgattcaaggcatttacgggagaaaaaattgtctcaaacatgaagaaatgaaataactgagtcaggcgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaag                                                                                                                                 >  1:51134‑M1/128‑143 (MQ=255)
                  taatCGAAATGGGATGTTTCGCACAGTCAATATATCTCATCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAAGACCAGAGAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa                                                                                                                              <  1:345840‑M1/143‑16 (MQ=255)
                       aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagcaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                         <  2:302995‑M1/24‑1 (MQ=255)
                         gaaacggtctaaataggctgattcaaggcatttacgggagaacaaatcggctcaaacctgaagaaatgaaatgacagaaacaaacgagaaaaatttacacgctaattcgcaccttccCTAATTAAATACAAAGAAAGGcaaca                                                                                                                       <  1:90574‑M1/26‑1 (MQ=255)
                            gggATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTACATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgata                                                                                                                    <  1:302422‑M1/143‑26 (MQ=255)
                             cggtctaaataggctgattcaaggcatttaagggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCa                                                                                                                   >  2:51543‑M1/114‑143 (MQ=255)
                              gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgccaattcagcaggatccTAATCAAATACAAAGAAAGGCACCAATCAAc                                                                                                                 <  2:265899‑M1/31‑1 (MQ=255)
                               gtctaaataggctgattcaaggcatttacgggaaaaaaaaacggctcaaacatgaagaaatgaaatgactgagcaggcggagaagaatttgccagctaattcgcacctaccCTAATTAAATACAAAGACAGACCACGATCAAc                                                                                                                 <  2:267550‑M1/32‑1 (MQ=255)
                                         gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAAAAAAGAAACAATCAACataatgttaa                                                                                                       <  1:185835‑M1/42‑1 (MQ=255)
                                         gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttaatcgcaccttccCTAATTAAATACAAAGAAAAGCAACAATCAACataatgttaa                                                                                                       <  2:37916‑M1/42‑1 (MQ=255)
                                         caGTCAAAATAACTCACTGTAAATAATCATCAGCGAAGGGTGAACACCTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                       <  1:381019‑M1/143‑39 (MQ=255)
                                           gTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCATTACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAATAAggaaggtgagaacaagtccctgatatgagatcatgtttgt                                                                                                     >  1:21421‑M1/1‑103 (MQ=255)
                                            tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACACACTACggacggtgcgaagaagtccctgatatgagatcatgtttgtc                                                                                                    >  1:7807‑M1/1‑102 (MQ=255)
                                            gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccAAAATAAAATAAAAAGAAAGGCAACAATCAACTTAATGTTAATGa                                                                                                    <  1:87148‑M1/45‑1 (MQ=255)
                                              aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcct                                                                                                  >  2:168200‑M1/1‑100 (MQ=255)
                                              aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                  <  1:149411‑M1/143‑44 (MQ=255)
                                                 aTAACTCCCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCCCATAATCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg                                                                                               <  2:223696‑M1/143‑47 (MQ=255)
                                                               ataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag                                                                                 >  1:342574‑M1/1‑83 (MQ=255)
                                                                   tcatcTACTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatacgagatcatgtttgcactctggagccatagaacagggtt                                                                             >  2:61332‑M1/1‑79 (MQ=255)
                                                                         gCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                       <  2:82179‑M1/143‑71 (MQ=255)
                                                                           tataAATAGTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                     <  2:80750‑M1/143‑73 (MQ=255)
                                                                            tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                    <  1:234348‑M1/77‑1 (MQ=255)
                                                                            tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAAAAATCAACTTAATGTTAATGAAATGATATACATATATTAACCACTAGTTTAAt                                                                    <  2:290744‑M1/77‑1 (MQ=255)
                                                                                acatgaagaaatgaaatgactgagtcagccgagaagaatttcaccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTAGTTTAATGCgg                                                                <  2:195809‑M1/81‑1 (MQ=255)
                                                                                 taatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                               <  1:265137‑M1/143‑79 (MQ=255)
                                                                                 cctgtggatatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                               >  2:327266‑M1/62‑143 (MQ=255)
                                                                                 catgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttccCTAATTAAATACAAAGAAAGACAACAATCAACTTAATGTTAATGAAATATTTTACAAACATTAACAACATGattaatacgca                                                               <  2:384262‑M1/82‑6 (MQ=255)
                                                                                       gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATCAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATAATTTACATATATTAACCACTTGTTTAATGCGGAGAATCa                                                         <  1:66946‑M1/88‑1 (MQ=255)
                                                                                        tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacacgtccctgatatgcgttcatgtttgtcatctggagccatagaacagggatcatcatgagtcatcaacttac                                                        >  1:37471‑M1/1‑58 (MQ=255)
                                                                                        aaatgaaatgactgagtcagtcgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAGTCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAatctg                                                        <  2:127619‑M1/89‑3 (MQ=255)
                                                                                             tGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggattcataataagacatcaactaacattcg                                                   >  1:262725‑M1/1‑53 (MQ=255)
                                                                                               cAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaagctgcgaacaagacactaatatgagaacatatatgtcatctggaacaataaaacagagttcatcatgagccatcaacttaccttcgcc                                                 >  1:149134‑M1/1‑51 (MQ=255)
                                                                                                 ttaCCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga                                               <  2:88153‑M1/142‑95 (MQ=255)
                                                                                                       gATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcactgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctccgccgacagcga                                         >  2:258306‑M1/1‑43 (MQ=255)
                                                                                                        tcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTtat                                        >  2:34412‑M1/39‑143 (MQ=255)
                                                                                                        aTAAGCTATTTTTAAACAGACATTTACCGTTCTATAAACTAAggaaggtgcgaacaagtccctgatatgagatcaggtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa                                        <  1:26961‑M1/143‑102 (MQ=255)
                                                                                                        aTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa                                        <  1:299991‑M1/143‑102 (MQ=255)
                                                                                                          atgcaatttttAAACAGACGCTTACCGTACAACAAACGAAggaaggtgcgaacaagtctctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                      <  2:313455‑M1/138‑104 (MQ=255)
                                                                                                          agccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGTAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATaa                                      >  1:288821‑M1/37‑143 (MQ=255)
                                                                                                             cTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                   <  2:342574‑M1/143‑107 (MQ=255)
                                                                                                             cTAGTTTTAAACCGACTCTTACCGCACAACGCACTAAtgaaggtgcgaacaagcccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                   <  2:353018‑M1/143‑107 (MQ=255)
                                                                                                                 aagaatttccccgcttattcgcaccttccCTAATTAAATACAGAGAAAGGCAACCATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAtt                               <  1:8183‑M1/114‑1 (MQ=255)
                                                                                                                        cAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc                        <  2:202715‑M1/143‑118 (MQ=255)
                                                                                                                            cgcttattcgcaccttccCTATTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat                    <  1:246725‑M1/125‑1 (MQ=255)
                                                                                                                            cgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTGAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat                    >  1:73314‑M1/19‑143 (MQ=255)
                                                                                                                             gcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGATTTACATATATTAACCAATAAATTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATg                   <  1:52842‑M1/126‑1 (MQ=255)
                                                                                                                                    cgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGATAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCg            >  2:359657‑M1/11‑143 (MQ=255)
                                                                                                                                      acaacaAACGAAgtaagctgcgaacaagtccctgatatgagatcatgtttgccatctggacccatagaaccgggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagtgccgtcagaccagaaaa          <  2:151415‑M1/143‑132 (MQ=255)
                                                                                                                                       accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAACACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACCTTTGAAATTATATgatcacaggaa         <  2:50896‑M1/136‑6 (MQ=255)
                                                                                                                                            aaCGAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccagagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagggccgtcagaccaggaaagggatt    >  2:182161‑M1/1‑6 (MQ=255)
                                                                                                                                              cTAAggaaggtgcgaacaagtccctgatatgcgatcatgtttgtcatctggagccatagaacacggttcatcatgagtcctcaacttaccttcgccgacagtaaattcagaagtaagcgcagaaagactagaaaagagacttt  >  1:173520‑M1/1‑4 (MQ=255)
                                                                                                                                              cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctagagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcactaagcgccctcacacccgcaaagagaaatc  >  2:353943‑M1/1‑4 (MQ=255)
                                                                                                                                              |                                                                                                                                              
GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTG  >  NC_000913/1979344‑1979628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.