| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3222461 = | 39 (0.960) | 3 (0.080) | 3/258 | 5.9 | 7.7% | intergenic (+12/‑172) | ebgR/ebgA | transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit |
| ? | NC_000913 | 3222493 = | 37 (1.000) | intergenic (+44/‑140) | ebgR/ebgA | transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACCATTCATGGTGATGGTAGTTTGTGTAATTGCTGGGGAGTTTAGTAAAATTTTTACTAAAAAGTAGCAGGTAAATGCATTTACTTTAACTGGATCACGAAAATAAACGGCAGCACTGTCCGGCAAAAACGATTGCCGGACAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3222606‑3222461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccggacagtgCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGTTCCGATTTCTCTCTACCGGGAGG > NC_000913/3222493‑3222628 AACCATTCATGGTGATGGTAGTTTGTGTAATTGCTGGGGAGTTTAGTAAAATTTTTACTAAAAAGTAGCAGGTAAATGCATTTACTTTAACTGGATCACGAAAATAAACGGCAGCACTGTCCGGCAAAAACGATTGCCGGACA > 1:609530/1‑143AACCATTCATGGTGATGGTAGTTTGTGTAATTGCTGGGGAGTTTAGTAAAATTTTTACTAAAAAGTAGCAGGTAAATGCATTTACTTTAACTGGATCACGAAAATAAACGGCAGCACTGTCCGGCAAAAACGATTGCCGGACA > 1:701139/1‑143 cattgtTGGTGATGGTAGTTTGTGTAAATGGAGAGGAATTTAGTAAAGTTTTTACTAAAAAGTAGCAGGTAAATGCATTTACTTTAACTGGATCACGAAAATAAACGGCAGCACTGTCCGGCAAAAACGATTGCCGGACAGTG < 2:150974/137‑1 AATAAACGGCAGCACTGTCCGGCAAAAACGATTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTTAGAATTTTACTAAACTCCCCAGCAATTACACAAACTACCA > 1:335432/1‑143 ACGGCAGCACTGTCCGGCAAAAACGATTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCA < 1:248026/122‑1 ACGGCAGCACTGTCCGGCAAAAACGATTGCCGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCA > 2:248026/1‑122 CGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGTTCCGATTTCTCTCTACCGGGA < 2:272978/143‑1 CGGACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATCAATGGTTCCGATTCCTCTCTACCGGGA > 2:614562/1‑143 GACAGTGCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGGACCGATTTCACTCTACCGGGAGG > 2:646130/1‑143 AACCATTCATGGTGATGGTAGTTTGTGTAATTGCTGGGGAGTTTAGTAAAATTTTTACTAAAAAGTAGCAGGTAAATGCATTTACTTTAACTGGATCACGAAAATAAACGGCAGCACTGTCCGGCAAAAACGATTGCCGGACAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3222606‑3222461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccggacagtgCTGCCGTTTATTTTCGTGATCCAGTTAAAGTAAATGCATTTACCTGCTACTTTTTAGTAAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGTTCCGATTTCTCTCTACCGGGAGG > NC_000913/3222493‑3222628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |