| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 417,368 | Δ5 bp | coding (227‑231/690 nt) | phoB → | response regulator in two‑component regulatory system with PhoR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 417368 | 417372 | 5 | 39 [0] | [0] 39 | phoB | response regulator in two‑component regulatory system with PhoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 417367 | 0 (0.000) | 39 (0.960) | 34/284 | 0.2 | 100% | coding (226/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR |
| ? | NC_000913 | 417373 = | 0 (0.000) | coding (232/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR | |||||
CGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCG > NC_000913/417227‑417506 | cGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGCTGTT‑CCCTCGCGCCACCGGTATCCAGTTCACCAAACACCTCAAGCGCGACTCCGTGACCCGGGcc > 2:256208‑M1/1‑141 (MQ=255) tCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCCGTTCATCAAACACCTCAAGCGCGAGTCGAAGACCCGGGcccgg > 2:347359‑M1/1‑138 (MQ=255) aaGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggt < 2:48850‑M1/143‑9 (MQ=255) cGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGCTGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgat < 1:660960‑M1/143‑12 (MQ=255) gAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTACTTCTCCTCGACTGGATGTT‑ACCGGGCGGCTCCGGTATCCAGTTCATCAGACACCTCAAGCGCGAGTCGATGCCCCGAGccagtgatgcagc > 2:147189‑M1/1‑130 (MQ=255) gAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgctgt > 1:482897‑M1/1‑130 (MQ=255) gAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgt < 1:439975‑M1/143‑14 (MQ=255) aaGATCATGACAGTGCTGCGAATCAACTGAAGGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTACCCAGTTCATCAATCACCGCAAGCGCGAGTCGATGACCCGGGccagtggtgatgtt < 1:139640‑M1/143‑15 (MQ=255) aGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccggtggtgatgttg > 1:38726‑M1/1‑128 (MQ=255) gACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgcca < 1:418978‑M1/143‑23 (MQ=255) tGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggg < 2:560634‑M1/143‑28 (MQ=255) cTGTGAATCAACTGAATGACCCCTGGCCTTATTTAATCCCCCTCGACTGGAGGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagagggga < 1:456338‑M1/143‑30 (MQ=255) gtgAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGAGGACCCGGGccagtggtgatgttgacggccagaggggaag > 1:481609‑M1/1‑112 (MQ=255) gtgggtgagccctgGCCGGATTGAGTTCTCCTCGAGGGGATGTT‑ACCTGGCGGCGCCGGTATCCAGGTCATCAAACGCCTCAAGCGCGAGTCGAGGAGCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatc < 2:196999‑M1/138‑41 (MQ=255) aaggggccctggccgGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcg < 1:317967‑M1/137‑44 (MQ=255) gtaccCTGGCCGGGTTTAACTCTCCTCGACTGG‑TGTTGACGTGGAGTCTCGGGTATCCAGTTCATCAACCACCTCCAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgc < 2:631095‑M1/141‑47 (MQ=255) ccTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgtggcccgccagaggggaagaagacgagcgcgtgcgcgg > 1:69205‑M1/1‑93 (MQ=255) cTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagaggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggc > 2:525619‑M1/1‑92 (MQ=255) tGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggcgatgttgacggccagaggggaagcagacgaccgcgggcgcggcc > 2:407958‑M1/1‑91 (MQ=255) tttAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaacc > 1:491310‑M1/1‑83 (MQ=255) tcGCCTGGACGTG‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatga < 2:175245‑M1/143‑72 (MQ=255) tcGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatga > 2:197346‑M1/1‑72 (MQ=255) tcGACTGGATGGT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatga > 1:619304‑M1/1‑72 (MQ=255) aCTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgacta < 2:561015‑M1/143‑75 (MQ=255) gTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgagtagggcgacttgaaaccggcgcggatgactatatcacc > 1:689704‑M1/1‑62 (MQ=255) t‑ACCTGGCGGCTCCGGTATCCATTTCATCAAACTCCTCAAACGCGAGTCGATGACCCGGGccagtgttgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaa < 1:136649‑M1/143‑84 (MQ=255) cTCCGGGATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcg < 2:660019‑M1/143‑94 (MQ=255) cGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccg > 2:666419‑M1/1‑47 (MQ=255) gTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaa < 1:494174‑M1/143‑99 (MQ=255) gTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgtgtgcgccgaaggagcgg > 1:725120‑M1/1‑38 (MQ=255) aaCACCTCAAGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgacggagctggtggcgcg > 1:668282‑M1/1‑30 (MQ=255) ccagcGCGAGACGGTGACCCCGGccagggttgacgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaa < 1:165507‑M1/141‑121 (MQ=255) caggcgcgggCCGAGGACCCGGGccagtggggatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaa < 1:256208‑M1/140‑121 (MQ=255) cAAGCGCGAGTAGAGGACCCTGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaa < 2:605175‑M1/143‑121 (MQ=255) aGCGCGAGTCGATGACCCGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatccaagc > 1:93003‑M1/1‑21 (MQ=255) aGCGCGAGTCGATGACCCGGGccagtggtgatgtagaccgccagaggggaagaagaagatcgagtgggcggccttgaaaacggcgcggaggacgatatcaccaagccgttttagccgaaggggctggtggcgggaatcaaagc > 2:33027‑M1/1‑21 (MQ=255) gATGCCCCGGGccagtggtgatgttggccgccaggggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaagcggtaatgcgc < 2:156149‑M1/143‑133 (MQ=255) ccGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaagcggtaatgcgcagtagt > 2:625871‑M1/1‑5 (MQ=255) cGGGccagtggtgatgttgaccgccagaggggaagaagaagatcgcgtgcgcggccttgaaaccggcgcggatgactatatcaccaagccgttttcgccgaaggagctggtggcgcgaatcaaagcggtaatgcgccggattt > 1:587796‑M1/1‑4 (MQ=255) | CGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCG > NC_000913/417227‑417506 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |