New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1428264NA (NA)16 (0.410) 3/272 6.1 100% noncoding (531/1196 nt) IS5 repeat region
?NC_000913 = 2066866 0 (0.000)noncoding (488/1195 nt) IS5 repeat region
Rejected: Coverage evenness skew score above cutoff.

TTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAA  >  NC_000913/1428131‑1428406
                                                                                                                                     |                                                                                                                                               
tgggCCGCGGTGGTGACCAGGCGGTGGGTTCGGCCACTGTTGGCATCGCCACCGATGTGGGCCCCGGTGGGGTGTGGCGGCTGATTACCGGTCTGGGTCTGATGCCTCTCCGGATGGCGTGGCTGCTCTTTGTTCTTGGTaga                                                                                                                                        <  2:325971/141‑1 (MQ=2)
     cgcgGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTgg                                                                                                                                   <  1:557742/143‑1 (MQ=32)
         gtggtgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTCTTCTTGGTAGCGCTGGGTGc                                                                                                                               >  1:354887/1‑143 (MQ=17)
          tggtgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCGGCGCTTTGTTCTTGGTAGCGCTGGGTggc                                                                                                                              >  1:392990/1‑141 (MQ=12)
            gtgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTc                                                                                                                            >  1:248696/1‑143 (MQ=32)
                 cAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAatga                                                                                                                       >  1:30078/1‑143 (MQ=32)
                       gtgGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCGGGGTGCCTCAATGAtggtgg                                                                                                                 >  1:401915/1‑143 (MQ=17)
                          gtctgcgCCACTCTTCGCATCGCCCCCCGTGTGGGCCTTCATGCCAAAGTGCCGCGGGTTGCCTTTCTTGGGCTGGTGCATCTCCGGATCGCGGTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCAt                                                                                                              <  2:146582/137‑1 (MQ=11)
                            tCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCGAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAAGGATGGTGGCagac                                                                                                            >  1:539124/1‑140 (MQ=12)
                              aGGCCTCTTTTGGCATCGACACCAACGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATccac                                                                                                          <  1:204901/143‑1 (MQ=255)
                                 ccACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTGGAGCGGGGGGCCTCAATGATGGTGGCATCCACCaa                                                                                                       >  1:197472/1‑143 (MQ=12)
                                  cACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGGTGGTGGCATccagcaga                                                                                                      >  1:511587/1‑141 (MQ=16)
                                    ctctTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCAGCAAAGt                                                                                                    >  1:393962/1‑143 (MQ=37)
                                     tctTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTg                                                                                                   >  2:258850/1‑143 (MQ=37)
                                        cggCCTCTACAGCCATGCGGGCCTTTATGCCAAAGTGCCACCGATTGCCTTTCTTGGTCTGATGCATCGCCGGATCGCGCCGCTGCTCTTTGTCCTTGGTAGAGCTGAGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCt                                                                                                <  1:41517/142‑1 (MQ=11)
                                         ggCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTCATGCACATCCGGGGCGCGTTGCTGCTCTGTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCtt                                                                                               <  1:729544/143‑1 (MQ=14)
                                             tCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGt                                                                                           >  1:697833/1‑143 (MQ=40)
                                               gACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCACAGTGCTTTGGGtca                                                                                         >  1:60756/1‑143 (MQ=255)
                                                acacCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCCCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGCGCCTTGGGtcat                                                                                        >  2:160119/1‑143 (MQ=255)
                                                    cAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATg                                                                                    >  1:6198/1‑143 (MQ=39)
                                                        gtgGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGc                                                                                <  1:83232/143‑1 (MQ=255)
                                                                tCATGCGAGAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCAGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCg                                                                       <  2:311507/143‑1 (MQ=255)
                                                                tCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCg                                                                       <  1:528446/143‑1 (MQ=255)
                                                                 cATGCCCACGTGCCACTGATGGCCTTTCTGGGTCTGATGCATCTCCGGGTCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCgg                                                                      <  2:177329/143‑1 (MQ=14)
                                                                    ggcAAAGTGCCACTGAGTGCCTGTCTTGGTCTGATGCATCTCCGGATCGCGGTGCTGCGCTTTGTTCTTGGGAGAGCTGTGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGgcca                                                                   <  1:557348/141‑1 (MQ=14)
                                                                    gacAAAGTGCTACTGATTGTCTTTTTGGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGTTGGCATCCACCAAAGTTCCTTGGGTCATCATGACGCCTGCTTCGgcca                                                                   <  2:300622/141‑1 (MQ=14)
                                                                    gCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGgcca                                                                   <  1:16248/143‑1 (MQ=255)
                                                                     ccAAAGTGCCACTGATTGCCCTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGgccag                                                                  <  1:524517/143‑1 (MQ=255)
                                                                         aGTGCGACTGATTGCCGTGCTTCGTCTGATGCATCTCCGGATGGCGTTGCTGCTCTTTGTTCTTGGTAGCGGTGGGTGCCTCAATGATGGTGGCATCCACCACAGTGCCTTGGGTCATCATGACGCCTGCTTCGGccagccag                                                              <  2:480776/143‑1 (MQ=14)
                                                                             ccACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGGTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCgcc                                                          >  2:368441/1‑141 (MQ=255)
                                                                              cACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGAtt                                                         >  1:609435/1‑143 (MQ=40)
                                                                                cTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGATGCCTGCTTCGGCCAGCCAGCGATTGa                                                       >  1:481370/1‑143 (MQ=255)
                                                                                     tGCCTTGCTTGGTCTGATGCATCTCCGGGTCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTc                                                  <  2:64517/143‑1 (MQ=255)
                                                                                       ccTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGCTTGATGGTCtt                                                >  1:681788/1‑143 (MQ=255)
                                                                                       ccTTGCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTGTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCCTGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCtt                                                <  1:540268/143‑1 (MQ=255)
                                                                                                           ctcCGGATCGCGTTGCTTCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGtt                            <  1:314295/143‑1 (MQ=255)
                                                                                                              cGGATGGCGTGGCTGCTCGTTGCTCTGGGGAGGGCGGTGGGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAt                         <  2:643005/143‑1 (MQ=14)
                                                                                                               ggATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAtg                        <  1:258850/143‑1 (MQ=255)
                                                                                                                  tCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGTCTTGGGTGATCAACACGAGTGACCTAAGGACCCAGCGATTGATGGTCCTGCACAATGGACGGGCCAGTTGAtgctg                     >  2:712813/1‑143 (MQ=14)
                                                                                                                   cgcgTTGCTGCTCTTTGTGCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAtgctgc                    <  1:64700/143‑1 (MQ=255)
                                                                                                                             ctgtttGTTGTTGGTCGAGCTGGGTGCCTCAATGACGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCGAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGt          <  2:123308/140‑1 (MQ=14)
                                                                                                                             ctctTTGTTCCTGGTAGAGCTGGGTGCCTCAATGATGCTGGCACCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGt          <  2:710641/143‑1 (MQ=255)
                                                                                                                                    ttCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCGGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCAAGTGGAAGCGACTCGGGCAGGTGGCGGaa   >  2:474993/1‑143 (MQ=14)
                                                                                                                                     tCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGCCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTCGCGGgaa  >  2:340622/1‑143 (MQ=255)
                                                                                                                                     |                                                                                                                                               
TTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAA  >  NC_000913/1428131‑1428406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.