New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)30 (0.740) 29/284 0.4 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

AATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGC  >  NC_000913/1292902‑1293172
                                                                                                                                         |                                                                                                                                     
aaTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAAGGTAAGGAATTCAAAATTGTTCTTTATTGTGTTCCTggtaa                                                                                                                                  <  2:889‑M2/143‑6 (MQ=255)
       aGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGTGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcc                                                                                                                           >  2:220905‑M2/1‑131 (MQ=255)
         tGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaa                                                                                                                         >  1:76382‑M2/1‑129 (MQ=255)
                cTCATTGCAGTAAGCTATTTCTTGTATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattg                                                                                                                  >  2:544046‑M2/1‑122 (MQ=255)
                   aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgata                                                                                                               >  1:131748‑M2/1‑119 (MQ=255)
                    ttGTAGTAATCTCAAACTTATAATGGGTGGACTAGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatag                                                                                                              <  2:445563‑M2/143‑26 (MQ=255)
                            aTCTCAAACTTATTTTGTGGTGTTTTGTTGAGGTAATAATAGAGCCCTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttat                                                                                                      >  2:544003‑M2/1‑110 (MQ=255)
                               tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAGTAGCCAGGCATGTAAGGAATTCATAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                   <  1:339758‑M2/143‑37 (MQ=255)
                               tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                   >  1:317163‑M2/1‑107 (MQ=255)
                                          ttGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                        >  1:252543‑M2/1‑96 (MQ=255)
                                          ttGGGGTGGTTTGTTGAGGTAATAACAGAGGCTTAAATTCAGTTGTGCAATAGCCAGGGATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCAGggtaatgacgccaactgaatgatagtgatttatgttaagataaggca                                                                                        <  2:485970‑M2/143‑48 (MQ=255)
                                               gtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGACTCCAAAATTGCTCTTTATTTTGTGCCGggtcatgactccaacttatagatagtgaaatatgtacacataatgccagatg                                                                                   <  1:53114‑M2/143‑53 (MQ=255)
                                                tggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatga                                                                                  >  1:558590‑M2/1‑90 (MQ=255)
                                                   tttGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTCTTTTAAGTTCTGTGGggtaagaacaccaacttattgatagtgttttatgttcagataatgcccgatgactt                                                                               <  2:712680‑M2/143‑57 (MQ=255)
                                                    ttgttgAGGTAATAATAGAGACTTAAATTCAGGTGTGCAATAGCCAGGAATATAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgctgacttt                                                                              <  2:383963‑M2/143‑58 (MQ=255)
                                                     tgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTATTTCTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatggctttg                                                                             <  1:330857‑M2/143‑59 (MQ=255)
                                                           ggTAATAATAGAGCCTTAAATTCAGTTGTGCAAGAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc                                                                       >  1:582500‑M2/1‑79 (MQ=255)
                                                                   taGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                               >  2:430812‑M2/1‑71 (MQ=255)
                                                                        ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatt                                                          <  1:471386‑M2/143‑78 (MQ=255)
                                                                           taggttcggtTGTGCAATAGTCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCTggtaatgactccaacttattgatagtgttttatgttcagataatgccagatgactttgtcatgcagctccaccgattttg                                                       >  2:655955‑M2/5‑63 (MQ=255)
                                                                           tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTGTGAAGGATGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                       >  2:154522‑M2/1‑63 (MQ=255)
                                                                            aaaTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                      >  1:320131‑M2/1‑62 (MQ=255)
                                                                                       tgCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttggagaacgacagcg                                           <  2:382460‑M2/143‑93 (MQ=255)
                                                                                               ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                                   >  1:519488‑M2/1‑43 (MQ=255)
                                                                                                cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc                                  <  1:658984‑M2/143‑102 (MQ=255)
                                                                                                         aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtg                         <  1:497098‑M2/143‑111 (MQ=255)
                                                                                                          aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcgcgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                        >  2:194577‑M2/1‑32 (MQ=255)
                                                                                                                           cTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagccccaccagtttttcgaccgacagtgacttccctcccagccgtgccaggcgctgcctgagat       <  2:180887‑M2/143‑129 (MQ=255)
                                                                                                                             ttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcaacttccgtcccagccgtgccaggtgctgcatcagattc     <  1:602330‑M2/143‑131 (MQ=255)
                                                                                                                                ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg  >  1:196160‑M2/1‑10 (MQ=255)
                                                                                                                                         |                                                                                                                                     
AATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGC  >  NC_000913/1292902‑1293172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.