| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 37 (0.920) | 34/282 | 0.2 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1303174 = | 0 (0.000) | coding (276/921 nt) | oppB | oligopeptide ABC transporter permease | |||||
CAATATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTG > NC_000913/1303039‑1303316 | tgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagaaagttgacagcagcaccCAGTTTTc > 2:4202‑M2/136‑143 (MQ=255) gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTcc < 2:221149‑M2/9‑1 (MQ=255) cggcggtgcgtgtgccgctacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGt < 1:120279‑M2/12‑1 (MQ=255) ggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagcaagttggcagcatccccCAGTTTTCCCGTTTCt > 2:521871‑M2/128‑143 (MQ=255) tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGc < 1:326410‑M2/18‑1 (MQ=255) ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTgg < 2:5181‑M2/26‑1 (MQ=255) gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatccccCAGTTTTCCCGTCTCTGCCACACTGGGAGCCgc > 1:629006‑M2/111‑143 (MQ=255) ccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCgcagc < 1:672714‑M2/36‑1 (MQ=255) cgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCAttttt < 1:394374‑M2/42‑1 (MQ=255) tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAGACTGGGAGCCGCAGCATTTTTCGTTGc > 1:1381‑M2/96‑143 (MQ=255) cagcggaacacgagggacagctgatagacacagaagccactggagcacctcaaaaacaccatcatacaccaaaccagtaagttggcagcatcaccCAGTGTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGc < 1:356999‑M2/48‑1 (MQ=255) agctgaacaggagggccagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCg < 1:278807‑M2/49‑1 (MQ=255) gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCCAACTGGAAGCCGCAGCATTTTTCCCTGCgg > 1:120030‑M2/94‑143 (MQ=255) acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATa < 1:160505‑M2/55‑1 (MQ=255) aggaggcacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACt < 1:654017‑M2/57‑1 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGtt < 1:587869‑M2/64‑1 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCGTTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGt > 1:29751‑M2/69‑143 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTCGTGCTGGCGt > 1:227191‑M2/69‑143 (MQ=255) aactcactggagcccgtcaaaaacaccatcttaccctacatcagtaagttggcagcatcgccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGc < 2:97496‑M2/81‑1 (MQ=255) cactggagcgccgcaaaaacaccagcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTGTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCa < 1:591408‑M2/85‑1 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTaaaacaaaa < 1:315633‑M2/96‑1 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGACGCAGCATTTTTCCTTGCGGTAATACTGGGTGATAGTGCTGGCGTTATTGCCGCACTAaaccaaaaca > 2:68104‑M2/46‑143 (MQ=255) aaaacaccctcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTGGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACAcc < 1:141429‑M2/100‑1 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCa > 1:268153‑M2/43‑143 (MQ=255) acaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCAGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCaaa > 2:711662‑M2/41‑143 (MQ=255) caccatcatacacgacaccagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAAt < 1:59850‑M2/104‑1 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAAATGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAAAAAAACACTAAAAggg > 1:104749‑M2/37‑143 (MQ=255) tcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAGACAAAACACCGactggacc > 2:396621‑M2/35‑140 (MQ=255) ctaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCCGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCg > 2:126097‑M2/28‑143 (MQ=255) aagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGGCTATACCGTGATGGGGCt > 1:44262‑M2/18‑143 (MQ=255) aaggtggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACAGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTAGTGCCGCATTAAGACAAAACACCAAATGGGACTATACCGTGATGGGGCt < 2:187950‑M2/126‑1 (MQ=255) agttggccgtctcaccCAGCTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATGTTTCCTTGCGGTAATACTGGTTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTg < 2:539731‑M2/127‑1 (MQ=255) agttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACCCCAAATGGGACTATACCGTGATGGGGCTg > 2:272353‑M2/17‑143 (MQ=255) agcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGa > 1:119788‑M2/10‑143 (MQ=255) atcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCg < 1:624423‑M2/137‑1 (MQ=255) atcaccCAGTTTCCCCGGTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCg < 1:186999‑M2/137‑1 (MQ=255) caccCCGTTTGCCCGTTGCGGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCggg < 1:131657‑M2/139‑1 (MQ=255) cCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGtt < 2:268153‑M2/142‑1 (MQ=255) cAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGgttg > 1:714595/1‑143 (MQ=255) | CAATATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTG > NC_000913/1303039‑1303316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |