New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)37 (0.920) 34/282 0.2 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 1303174 = 0 (0.000)coding (276/921 nt) oppB oligopeptide ABC transporter permease

CAATATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTG  >  NC_000913/1303039‑1303316
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tgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagaaagttgacagcagcaccCAGTTTTc                                                                                                                                         >  2:4202‑M2/136‑143 (MQ=255)
 gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTcc                                                                                                                                        <  2:221149‑M2/9‑1 (MQ=255)
    cggcggtgcgtgtgccgctacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGt                                                                                                                                     <  1:120279‑M2/12‑1 (MQ=255)
        ggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagcaagttggcagcatccccCAGTTTTCCCGTTTCt                                                                                                                                 >  2:521871‑M2/128‑143 (MQ=255)
          tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGc                                                                                                                               <  1:326410‑M2/18‑1 (MQ=255)
                  ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTgg                                                                                                                       <  2:5181‑M2/26‑1 (MQ=255)
                         gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatccccCAGTTTTCCCGTCTCTGCCACACTGGGAGCCgc                                                                                                                >  1:629006‑M2/111‑143 (MQ=255)
                            ccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCgcagc                                                                                                             <  1:672714‑M2/36‑1 (MQ=255)
                                  cgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCAttttt                                                                                                       <  1:394374‑M2/42‑1 (MQ=255)
                                        tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAGACTGGGAGCCGCAGCATTTTTCGTTGc                                                                                                 >  1:1381‑M2/96‑143 (MQ=255)
                                        cagcggaacacgagggacagctgatagacacagaagccactggagcacctcaaaaacaccatcatacaccaaaccagtaagttggcagcatcaccCAGTGTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGc                                                                                                 <  1:356999‑M2/48‑1 (MQ=255)
                                         agctgaacaggagggccagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCg                                                                                                <  1:278807‑M2/49‑1 (MQ=255)
                                          gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCCAACTGGAAGCCGCAGCATTTTTCCCTGCgg                                                                                               >  1:120030‑M2/94‑143 (MQ=255)
                                               acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATa                                                                                          <  1:160505‑M2/55‑1 (MQ=255)
                                                 aggaggcacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACt                                                                                        <  1:654017‑M2/57‑1 (MQ=255)
                                                        acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGtt                                                                                 <  1:587869‑M2/64‑1 (MQ=255)
                                                                   aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCGTTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGt                                                                      >  1:29751‑M2/69‑143 (MQ=255)
                                                                   aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTCGTGCTGGCGt                                                                      >  1:227191‑M2/69‑143 (MQ=255)
                                                                         aactcactggagcccgtcaaaaacaccatcttaccctacatcagtaagttggcagcatcgccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGc                                                                <  2:97496‑M2/81‑1 (MQ=255)
                                                                             cactggagcgccgcaaaaacaccagcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTGTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCa                                                            <  1:591408‑M2/85‑1 (MQ=255)
                                                                                        ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTaaaacaaaa                                                 <  1:315633‑M2/96‑1 (MQ=255)
                                                                                          caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGACGCAGCATTTTTCCTTGCGGTAATACTGGGTGATAGTGCTGGCGTTATTGCCGCACTAaaccaaaaca                                               >  2:68104‑M2/46‑143 (MQ=255)
                                                                                            aaaacaccctcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTGGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACAcc                                             <  1:141429‑M2/100‑1 (MQ=255)
                                                                                             aaacaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCa                                            >  1:268153‑M2/43‑143 (MQ=255)
                                                                                               acaccatcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCAGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCaaa                                          >  2:711662‑M2/41‑143 (MQ=255)
                                                                                                caccatcatacacgacaccagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAAt                                         <  1:59850‑M2/104‑1 (MQ=255)
                                                                                                   catcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAAATGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAAAAAAACACTAAAAggg                                      >  1:104749‑M2/37‑143 (MQ=255)
                                                                                                     tcatacactaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAACCTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAGACAAAACACCGactggacc                                    >  2:396621‑M2/35‑140 (MQ=255)
                                                                                                            ctaaatcagtaagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCCGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCg                             >  2:126097‑M2/28‑143 (MQ=255)
                                                                                                                      aagttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGGCTATACCGTGATGGGGCt                   >  1:44262‑M2/18‑143 (MQ=255)
                                                                                                                      aaggtggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACAGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTAGTGCCGCATTAAGACAAAACACCAAATGGGACTATACCGTGATGGGGCt                   <  2:187950‑M2/126‑1 (MQ=255)
                                                                                                                       agttggccgtctcaccCAGCTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATGTTTCCTTGCGGTAATACTGGTTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTg                  <  2:539731‑M2/127‑1 (MQ=255)
                                                                                                                       agttggcagcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACCCCAAATGGGACTATACCGTGATGGGGCTg                  >  2:272353‑M2/17‑143 (MQ=255)
                                                                                                                              agcatcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGa           >  1:119788‑M2/10‑143 (MQ=255)
                                                                                                                                 atcaccCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCg        <  1:624423‑M2/137‑1 (MQ=255)
                                                                                                                                 atcaccCAGTTTCCCCGGTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCg        <  1:186999‑M2/137‑1 (MQ=255)
                                                                                                                                   caccCCGTTTGCCCGTTGCGGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCggg      <  1:131657‑M2/139‑1 (MQ=255)
                                                                                                                                      cCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGtt   <  2:268153‑M2/142‑1 (MQ=255)
                                                                                                                                       cAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGgttg  >  1:714595/1‑143 (MQ=255)
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CAATATCGAAGCGAAATATCATCTTAATGATCCGATCATGACACAGTATTTCAGCTACCTGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTG  >  NC_000913/1303039‑1303316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.