| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1097101 | 58 (0.880) | 9 (0.150) | 7/266 | 7.7 | 14.1% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097105 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGC > NC_000913/1096959‑1097242 | cACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGc < 2:950729/143‑1 (MQ=31) aCCCGGTGTGTGCAATAGACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCt > 2:207631/1‑143 (MQ=11) aCCCGGTGGGGGCAATATAATAAAAGAAGGCCCGTACTTTCGTACGAGCTCTCCTTTAAATCTGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCt < 2:949839/143‑1 (MQ=11) aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAccc > 1:737909/1‑143 (MQ=32) gAAAACAAAGCCCGTACTTTCGTCCGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCTCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCATCTGGTTGTAGTCAGTTGGCGAccccc < 2:1097696/143‑1 (MQ=11) gAAAAAAAAGCCCGTACTTTCGTACGTGATCATCGGTACATATGGCAGTGG‑GGGAGGGATTGACCCGCTTCGCTCGCCCTCCGGGCCGCCCGCTCACTTCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTCGACGAccccc > 2:86957/1‑143 (MQ=11) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCCCGGTCTGTCCAACGGGCTGTCCGCGGTTGCCGAcccccc > 2:707089/1‑142 (MQ=11) aacgggccGTGCGTTCGTGCGAGTTCTTCTTTGCATAGGGGGGTGC‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCGCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCg < 2:1178621/137‑1 (MQ=11) taaGCCCGGACTTTCGTACGAGGTCTTCTTTACATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgg < 2:1069981/142‑1 (MQ=12) ccGTACTTTCGTACGAGCTCTTCCTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCtt < 1:23402/143‑1 (MQ=17) cTTGCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGCGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAt < 2:800927/143‑1 (MQ=17) ttCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGATTGACTCGCTTCGCTCGCCCCGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCCGTTGTCGACCCCCGGTCGGGGCCTCTCATc > 1:499269/1‑143 (MQ=11) aCGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGCGATTGACGCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCg < 1:388933/143‑1 (MQ=17) gcgcttctgTAAATATGGCGGGGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCTAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt < 1:355192/140‑1 (MQ=255) tcttctTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 2:103835/143‑1 (MQ=32) cttcttTAAATGTGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCGTCCCCCCGGtgtgtg < 2:1000680/143‑1 (MQ=17) ttctgTGAAGATGGCGGTGA‑GGGGGGGATGGACGCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGc < 2:681321/143‑1 (MQ=11) cttTAAAGATGGCGGCGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa < 1:394935/143‑1 (MQ=17) cttGAAAGATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGAGGGAGGAATACCGACGGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa < 1:547206/143‑1 (MQ=11) ttAAGTATGGCGGTGA‑GGGGGGGATTGACTCGCTCCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATa < 1:903827/143‑1 (MQ=17) tgaaaTAGGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATa < 2:221848/141‑1 (MQ=17) aaaTATGGCGGTGA‑GGGGTGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATaca < 2:47616/143‑1 (MQ=21) agtatGGCGGTGA‑GGGGGGGATTGCCTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATacac < 1:983132/141‑1 (MQ=25) ctatGGCGGTGA‑GGGGGGGATTGACGCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTCGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACg < 2:625673/142‑1 (MQ=21) atGGCGGGGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaa < 2:155854/143‑1 (MQ=25) tGGCGGCGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCGGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGCCCCACCGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaa < 1:444473/143‑1 (MQ=11) cGGTGA‑GGGGGCGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaaaa < 1:702915/143‑1 (MQ=25) gA‑GGTGGGGATTGACTCGCTTCGCTCGCCATGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCGGGCGCCAGTTGTCGACCCCCGGTTGGGGTGTCTCATCCCCCCGGTGTATGAAATACACGAAAAAAAAGc < 2:32706/143‑1 (MQ=11) gA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACGGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGc < 2:140051/143‑1 (MQ=25) ggggggATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt > 1:276412/1‑116 (MQ=33) ggggggATTGACTCGCTTCGCTCGCCCCGCGGGCGGCCCGCGCACGGCGTTCACGGCCTGTCCAGCGGGCTGCCGCCAGGTGGCGGCCCCCGGACGGGGCTTCTCATCCCCCCGGTGTGTGCCATCCACGAAAAAAAAGCCCg > 2:1001210/1‑143 (MQ=11) gggATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCtt > 2:613090/1‑99 (MQ=33) cctggcccgcgtcgcgCGCCCTGCGGGCGGCCCGCGCACCGCGTTCACGGTCGGCCCAACGGGCGGTCGCCAGTTGTCGACCCCCGGTGGGGGCTTCTGATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACttt < 2:124857/136‑1 (MQ=11) cgcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGa > 1:442899/1‑143 (MQ=35) gctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCtctt > 1:968746/1‑143 (MQ=34) cgcCCTTGGGGCAGCCGGGTGTGTGCGTGCACGGTCGGCCGCACTGGCGCACGCCAGTTGTCGACCCCCGAACGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTcttctt < 2:1126624/143‑1 (MQ=11) cccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt > 2:1462/1‑94 (MQ=33) tGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAat > 2:1109553/1‑143 (MQ=34) cGGGCAGCCCGCTCACTGCTGTGCCGGTCGGTCCAACTGGCTGTCGCCAGTTGCCGACCCCCGGTCGGGGCTTCTCGTCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAatat < 2:512967/143‑1 (MQ=11) aGCCCGCTCACTGCGTTCACGGTCTGTCCGACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAGAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCgg < 1:947276/143‑1 (MQ=25) ccGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGa > 2:453202/1‑143 (MQ=35) gCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgg > 1:301240/1‑143 (MQ=35) tCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACCTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggg > 2:1186455/1‑143 (MQ=25) aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGa > 1:1084876/1‑137 (MQ=35) cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgggg > 2:991800/1‑55 (MQ=38) cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCa > 1:1044109/1‑59 (MQ=38) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGAc > 2:38951/1‑143 (MQ=35) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGAc > 2:703795/1‑143 (MQ=34) cGGTCTGTCCCACTGGCGCTCGCCAGTTGTCGCCCCCCGGTCGGGGCTTCTCCTCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATTGCGGTGAGGGGGGGATTGACtcg < 1:329537/143‑1 (MQ=11) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATat > 2:41436/1‑71 (MQ=21) tCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGtgtgtg > 2:667530/1‑65 (MQ=37) ttCCAACTGGCGGCCGCCAGTTGTCGACCCCGGGTCGGGGCTTCTCACCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcgc < 2:442899/142‑1 (MQ=255) gTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAACGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcggttcgc > 1:257151/1‑143 (MQ=25) tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccccc > 2:1038849/1‑52 (MQ=38) tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATccccc < 1:1038849/52‑1 (MQ=35) tCCAACTGGCGGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcgct < 1:1001210/143‑1 (MQ=25) cAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaa > 1:764938/1‑72 (MQ=40) cAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAACAAAACGCCCGTACTTTCGTACGAGCCCCTCTTTAAATATGGCGGTGAGGGGGGGCTTGCCGCGCCtcgcgcg > 2:297243/1‑143 (MQ=11) gCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGCGCTCTTCTCTGCATCTGGCGGTGAGGGGGTGATTGACTCGCCTCGCTCCCCCtca > 2:1188145/1‑141 (MQ=11) | CACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGC > NC_000913/1096959‑1097242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |