Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)65 (0.990) 54/282 0.2 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)74 (1.130) 59/282 0.1 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 140 total aligned reads displayed.

TGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTG  >  NC_000913/1292892‑1293174
                                                                                                                                            |                                                                                                                                              
gctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctaaacaggaggccgagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTtg                                                                                                                                              >  1:1056441‑M1/141‑143 (MQ=255)
  ttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCGCAAACTTATATTGGGGTGGTTTGTTGGGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtgtg                                                                                                                                            <  2:89693/143‑1 (MQ=255)
  tgatgtacggcggtgcttttgccgttacgcaccaccccgtcagtagctaaaccggagggccagctgatagaaaaagaagccactggagcacctcaacaacaccatcatccactaaatcagtaagttggcagcatcaccTtgtg                                                                                                                                            <  1:775189‑M1/5‑1 (MQ=255)
    atgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaactcagtaagttggcagcatcacctctaacg                                                                                                                                          <  2:649451‑M1/7‑7 (MQ=255)
     ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGCGGTGATCATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGATCTTTATTTTGTgccg                                                                                                                                         >  1:718208/1‑143 (MQ=255)
     ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccg                                                                                                                                         <  1:988814/143‑1 (MQ=255)
        aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGCTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCAGggt                                                                                                                                      <  1:1149253‑M2/143‑4 (MQ=255)
          aaTGTTAAGTGCTTCGCTTATTGTAGTAATCTCAAACTGATATTGGGGTGGTTTGCTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaa                                                                                                                                    >  1:1151824‑M2/1‑138 (MQ=255)
            ttttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTCAGGCATTCAAAATTGTTCTTTATTTTGTGCCGggtaatg                                                                                                                                  <  1:1116803‑M2/143‑8 (MQ=255)
            cggtgctgttgccgttccgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataa                                                                                                                                  >  2:567573‑M1/129‑143 (MQ=255)
             tttGAGTGCTTCGCTCATTGTAGTAATTTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGACTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatga                                                                                                                                 >  2:773138‑M2/1‑135 (MQ=255)
             tttAAGTGCTTCGCTCAGTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatga                                                                                                                                 >  2:199310‑M2/1‑135 (MQ=255)
             gttaAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatga                                                                                                                                 >  2:1012539‑M2/2‑135 (MQ=255)
                   tGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaa                                                                                                                           <  2:677746‑M2/143‑15 (MQ=255)
                    ttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCttt                                                                                                                          >  1:64445‑M1/121‑143 (MQ=255)
                       ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaaccccatcatacactaaatcagtaagttgacagcatcaccTTGTGCCGCCAATAAATATCTTTTCa                                                                                                                       <  1:602935‑M1/26‑1 (MQ=255)
                        cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATCAATATCTTTTCAt                                                                                                                      <  2:1116918‑M1/27‑1 (MQ=255)
                              ttGTAGTAATCTCAAGCTTGTATTGGGGTGGTTTGTTGAGGTAAGAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatag                                                                                                                >  2:298683‑M2/1‑118 (MQ=255)
                                accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctgaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATtaa                                                                                                              <  2:734761‑M1/35‑2 (MQ=255)
                                  agtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtt                                                                                                            >  1:426530‑M2/1‑114 (MQ=255)
                                   gtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                   >  1:882366‑M2/1‑113 (MQ=255)
                                    ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAg                                                                                                          <  1:646256‑M1/39‑1 (MQ=255)
                                         tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                     <  2:1177832‑M2/143‑37 (MQ=255)
                                             aCTTATATTGGTGTGGTTTGTTTATTTAATAATAGATCCTTAAATTCAGTTGTGCAATAGCCAAGAAAGAAAGGAATTCAAAATTGTGCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcaga                                                                                                 >  1:675320‑M2/1‑103 (MQ=255)
                                                tataTTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataa                                                                                              >  1:146326‑M2/1‑100 (MQ=255)
                                                     caggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCAtata                                                                                         <  1:939‑M1/56‑1 (MQ=255)
                                                     caggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCAtata                                                                                         >  1:819303‑M1/88‑143 (MQ=255)
                                                       gtgtggtttGGTGTGTTAATAATAGAGCGTTAAAGTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGGGCCGggtaatgactccaacttattgatagtgttttatgttctgataatgcccga                                                                                       >  1:823164‑M2/3‑93 (MQ=255)
                                                        gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGcc                                                                                      <  1:806539‑M1/59‑1 (MQ=255)
                                                         gtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgctg                                                                                     <  1:177935‑M2/143‑53 (MQ=255)
                                                               agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgc                                                                                                                                        <  1:1107267‑M1/9‑1 (MQ=255)
                                                               agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgc                                                                                                                                        >  2:1107267‑M1/78‑86 (MQ=255)
                                                                 ttgAGGTAATAATAGAGCCTTAGATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgaccttgtc                                                                             >  1:112601‑M2/1‑83 (MQ=255)
                                                                 ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAACAGACGCGGCATATAGCCCTATTTaca                                                                             <  2:372156‑M1/68‑1 (MQ=255)
                                                                 ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTaca                                                                             <  1:533942‑M1/68‑1 (MQ=255)
                                                                  tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                            <  2:445938‑M1/69‑1 (MQ=255)
                                                                     tagagacagaagccactgcagcaccgccgcaacaccatcatacactgaatcagtaagttgggagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCga                                                                         >  1:492821‑M1/72‑143 (MQ=255)
                                                                     ggTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcccacttattgatagtgttctatgttcagatcctgcccgatgcctttgtcatgc                                                                         <  2:127780‑M2/143‑65 (MQ=255)
                                                                      gTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTGTTTTGTGGCGggaaattactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgca                                                                        <  1:865761‑M2/143‑66 (MQ=255)
                                                                          acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                    <  2:573543‑M1/77‑1 (MQ=255)
                                                                           aataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagcccc                                                                   <  2:918576‑M2/143‑71 (MQ=255)
                                                                            agcagccactcgagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatctccTTGGGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTc                                                                  >  1:785107‑M1/65‑143 (MQ=255)
                                                                             gaagccactggatcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCg                                                                 >  2:195200‑M1/64‑143 (MQ=255)
                                                                                 ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAGATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTCTTTACACCGATGATTTCgcagc                                                             <  2:148319‑M1/84‑1 (MQ=255)
                                                                                         ttCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgctgtctttgtcatgccgctccaccgaatttgagaa                                                     <  2:938526‑M2/143‑85 (MQ=255)
                                                                                         ttCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaa                                                     >  1:1021984‑M2/1‑59 (MQ=255)
                                                                                          cacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGt                                                    >  2:976395‑M1/51‑143 (MQ=255)
                                                                                             ctcaaaaacaccatcatacacgaaatcagtaagttggcagcatccccTTGTGCCGCCAATAGATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCTCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                                 >  2:505289‑M1/48‑143 (MQ=255)
                                                                                             cgcaaaaacaccatcatacactaaatgagtaagttggcagcagcaccATGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                                 >  2:337645‑M1/48‑143 (MQ=255)
                                                                                              ttGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgagagtgtgttatgttcagataatgcccgatgactttgtcatgccgctccaccgattttgagaacgcca                                                <  2:889510‑M2/143‑90 (MQ=255)
                                                                                              tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGCGGTTaaa                                                <  2:646621‑M1/97‑1 (MQ=255)
                                                                                              tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTaaaa                                                <  2:727208‑M1/97‑1 (MQ=255)
                                                                                              tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                                <  2:608182‑M1/97‑1 (MQ=255)
                                                                                               caagaagaccatcatacactaaatcagtcggttcgcagcatcacgTTGTGCCGCCAAGAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaaa                                               >  2:1090131‑M1/46‑143 (MQ=255)
                                                                                               caaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaaa                                               <  1:1016547‑M1/98‑1 (MQ=255)
                                                                                                gtgtAATGGCCAGGAATGTAATGAATTGAAAGTGGTTCTTTATTTTGTGCCGggtaatgactccaacttatttatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagc                                              >  2:1082806‑M2/1‑52 (MQ=255)
                                                                                                 aaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTCAAAACt                                             <  2:14920‑M1/100‑1 (MQ=255)
                                                                                                  gCAATATCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcga                                            >  2:103481‑M2/1‑50 (MQ=255)
                                                                                                  aaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACtt                                            <  1:113235‑M1/101‑1 (MQ=255)
                                                                                                   cAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgac                                           <  2:157163‑M2/143‑95 (MQ=255)
                                                                                                   cAATAGCCAGGAATGTAAGGAATTCAAAATGGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgac                                           >  1:428676‑M2/1‑49 (MQ=255)
                                                                                                     caccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTGGCAGCACGGGAGGTGAAAACTtccg                                         <  2:121997‑M1/104‑2 (MQ=255)
                                                                                                     caccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCt                                         <  1:965440‑M1/104‑1 (MQ=255)
                                                                                                      tAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc                                        >  1:1112984‑M2/1‑46 (MQ=255)
                                                                                                       ccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGa                                       <  1:810519‑M1/106‑1 (MQ=255)
                                                                                                       aGCCAGTAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttcc                                       >  2:74563‑M2/1‑45 (MQ=255)
                                                                                                        catcatacactaaatcagtgagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAt                                      <  2:808628‑M1/107‑1 (MQ=255)
                                                                                                         ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                                     <  2:706873‑M2/143‑101 (MQ=255)
                                                                                                         ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgt                                     <  1:576223‑M2/143‑101 (MQ=255)
                                                                                                         atcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAtt                                     <  1:912035‑M1/108‑1 (MQ=255)
                                                                                                         accatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAtt                                     >  1:32379‑M1/36‑143 (MQ=255)
                                                                                                          tcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTc                                    <  2:685955‑M1/109‑1 (MQ=255)
                                                                                                           aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc                                   >  2:708117‑M2/1‑41 (MQ=255)
                                                                                                           aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGAGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccggtgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc                                   <  1:769233‑M2/143‑103 (MQ=255)
                                                                                                            acacactaaatcagtaagttgtcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCAt                                  >  1:48227‑M1/33‑143 (MQ=255)
                                                                                                              acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                                >  2:757272‑M1/31‑143 (MQ=255)
                                                                                                               agttaagGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagatgatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc                               >  2:452370‑M2/4‑37 (MQ=255)
                                                                                                                  tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                            >  2:1001728‑M2/1‑34 (MQ=255)
                                                                                                                   aaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAt                           <  1:485196‑M1/118‑1 (MQ=255)
                                                                                                                   aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcctgcagctccaccgattttcagaacgacagcgacttccgtcccagcaatg                           <  2:837063‑M2/143‑111 (MQ=255)
                                                                                                                   aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaccgcgacttccgtcccagccgta                           <  2:652733‑M2/143‑111 (MQ=255)
                                                                                                                    aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtcatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacctccggcccagccgtgc                          <  2:420024‑M2/143‑112 (MQ=255)
                                                                                                                    aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                          <  2:415222‑M2/143‑112 (MQ=255)
                                                                                                                    aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgaagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                          <  1:306950‑M2/143‑112 (MQ=255)
                                                                                                                      tcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCacgtcacactat                        <  2:156626‑M1/121‑5 (MQ=255)
                                                                                                                      tcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGCCACAtttt                        <  2:278462‑M1/121‑1 (MQ=255)
                                                                                                                      gAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcca                        <  1:592046‑M2/143‑114 (MQ=255)
                                                                                                                       cagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTa                       <  2:173522‑M1/122‑1 (MQ=255)
                                                                                                                              ttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTCTGCGgag                <  2:794178‑M1/129‑1 (MQ=255)
                                                                                                                               tggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAttt                         <  2:619769‑M1/120‑1 (MQ=255)
                                                                                                                                ttGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct              >  1:415222‑M2/1‑20 (MQ=255)
                                                                                                                                 tGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc             >  1:8433‑M2/1‑19 (MQ=255)
                                                                                                                                   agcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTAt           <  2:1044380‑M1/134‑1 (MQ=255)
                                                                                                                                     gttttttttgTGGCGggtaatgaatccatcttattgatagtgttttatgttcagatgatgcccgatgactttgtcatgcagctccaccgattttggggccgccagctactaccgtcccagccgtgccaggtgctgcctcagat         >  2:254201‑M2/2‑15 (MQ=255)
                                                                                                                                     cTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgccttccgtcccagccgtgccaggtgctgcctccgat         <  2:234018‑M2/143‑129 (MQ=255)
                                                                                                                                       tcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGCGATTATCGTa       <  1:198544‑M1/138‑1 (MQ=255)
                                                                                                                                         accTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAgg     >  1:923176‑M1/4‑143 (MQ=255)
                                                                                                                                         aTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag     >  1:697673‑M2/1‑11 (MQ=255)
                                                                                                                                           cTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATGGtagggt   <  1:816816‑M1/142‑3 (MQ=255)
                                                                                                                                            ttGTGCCGggtaatgactccaacttattgataatgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagcacgacagcgacttccgtcccagccgtgccagcaactgccacacattccgctt  <  2:1009531‑M2/143‑136 (MQ=255)
                                                                                                                                            |                                                                                                                                              
TGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTG  >  NC_000913/1292892‑1293174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.