New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3944978	NA (NA)	15 (0.240)	8/270	7.3	32.9%	noncoding (1275/2904 nt)	rrlC	23S ribosomal RNA of rrnC operon
	?	NC_000913	= 4038811	32 (0.490)					noncoding (1293/2905 nt)	rrlA	23S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.

AAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCC  >  NC_000913/4038673‑4038868                                                                                                                                           |                                                          aggCTGCGGGAGCGGCACTGTGGGTTGTTGGGCAGGGGAGCGTTCTGTAAGCCTCGGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGAGAATGCTCACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGcc                                                       <  2:650581/141‑1 (MQ=11)  aGCGGCGGCAGCGACACTGGGTGTTGTTGGGGAGGGGAGCGTTCTGTAAGCCTGGGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg                                                      <  2:157252/143‑1 (MQ=14)   gcgccgccAGCGAGCCTATGGGTTGTGGGGTAGGGGAGCGTGCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCgg                                                     <  1:477009/136‑1 (MQ=11)   gCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATACGTAACAATAAAGCGGGTGAAAAGCCCGCTCGCCgg                                                     <  1:448974/143‑1 (MQ=255)     tGCGGCAGCGACACTATGAGATGTGGGTGTGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCTGGaa                                                   <  1:739973/143‑1 (MQ=14)        gttaGCGACACTATGTGTTGGTGTGTAGGCGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAc                                                <  1:94226/140‑1 (MQ=255)                  cTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAATTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTcc                                      <  2:357236/143‑1 (MQ=25)                     tgtgTTGTTGGGTAGGGGCGCGTTCTGTAAGCCTGTGAAGGTGTGATGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGt                                   <  1:198773/143‑1 (MQ=21)                         ttgtcgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa                               <  1:897839/143‑1 (MQ=17)                           gttgGGTAGGGGAGCTTTTTTGAATCTTGTGAAGGTGTGGTGTGAGGCATGCTGGAGGTATCAGAAGGGCGAAGGCTGACATAAGTGACGAGAGAGGGGGTGGCGCGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACg                             <  1:504006/143‑1 (MQ=11)                           gttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGGCATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTGCTGTCCAACg                             >  2:957802/1‑143 (MQ=17)                           gttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCGGCTGGCCGGATGACCAAGGGTTCCTGTCGaagg                             >  1:1054859/1‑141 (MQ=255)                            ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCATGTCCAACGt                            >  2:551847/1‑143 (MQ=17)                            ttgGGTAGGGGAGCGTTCTGTAAGCCGGTGAAGGTGTGCGGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGt                            <  2:334081/143‑1 (MQ=17)                               ggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGACAAGCCCGCTCGCCGGAAGACCAAGCGTTCCTGTCCAACGTTaa                         >  2:457306/1‑143 (MQ=17)                                  aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg                      <  1:1032765/143‑1 (MQ=32)                                    gggTGCGTTCTGTAGGCCTGTGGAGGGGTGCTGTGAGGCATGCTGGAGGTAGCAGAAGTGCGAATGCTGACATAAGTAACCATAGAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                    <  2:866119/143‑1 (MQ=11)                                    gggAGCGTTCCGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                    <  1:666500/143‑1 (MQ=17)                                     ggAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgggg                   >  1:449440/1‑143 (MQ=32)                                         cGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTCACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTACTCGGGGCAgg               >  2:885810/1‑143 (MQ=17)                                         cGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGAGAAAAGCCCGCTCGCCGGAAGACCAAGGGCTCCTGTCCAACGTTAATCGGGGAAgg               >  2:618127/1‑143 (MQ=12)                                          gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTACTCGGGGCAggg              >  1:821801/1‑143 (MQ=17)                                           ttCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt             >  1:980641/1‑143 (MQ=32)                                            tcagTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATGAAGCGGGTGGAAAGGCCGCTCGCCGGGAGAGCAAGGGTTCCTGTCCAACGGGAATGGGGGCAGGGTg            >  2:431682/4‑143 (MQ=11)                                              tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAg          >  1:625008/1‑143 (MQ=32)                                              tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGGGAg          >  2:279370/1‑143 (MQ=17)                                              tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCGGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAg          >  1:1124758/1‑143 (MQ=17)                                               gTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCACGCTCGCCGGAAGCCCAAGGGTTCCTGTCGAACGTTAATCGGGGAAGTGTGAGt         >  2:98710/1‑143 (MQ=11)                                               gTAAGCCTGTGAAGGTGTGCTGTGAGACATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGAGTGAAAAGCCAGCTCGCCGGAAGACCAAGGGTTCCTGCACAACGTAAATCGGGGCAgggagggt         >  2:956812/1‑138 (MQ=11)                                                   gCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACGTAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc     >  1:1100274/1‑143 (MQ=17)                                                     cTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc   >  1:1130909/1‑143 (MQ=32)                                                      tgtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATAGAGGCAGGTAGGTTCGAcccc  >  1:434100/1‑143 (MQ=11)                                                                                                                                           |                                                          AAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCC  >  NC_000913/4038673‑4038868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.