New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3943624NA (NA)6 (0.130) 5/268 6.0 24.9% intergenic (+114/‑80) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 = 3943642 19 (0.400)intergenic (+132/‑62) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
Rejected: Coverage evenness skew score above cutoff.

CTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGC  >  NC_000913/3943541‑3943719
                                                                                   |                                                                                               
cTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaa                                      <  1:423020/143‑1 (MQ=32)
cTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaa                                      <  2:691918/143‑1 (MQ=32)
    atatCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaaa                                  <  2:771619/143‑1 (MQ=32)
    atatCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaaa                                  <  2:42012/143‑1 (MQ=32)
         tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCt                             >  2:618944/1‑143 (MQ=32)
         tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACAGCt                             >  1:652502/1‑143 (MQ=17)
         tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCGCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCt                             >  2:30127/1‑143 (MQ=17)
          cAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTGAAAATCTGGATCAAGCTGAAAATTGAACAACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCAAACGAACCATCtt                            >  2:582383/1‑143 (MQ=11)
          cAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTATTTAAAAATCCGGATCAAGTTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATTATGAATCGAAAGAAACATGtt                            >  1:726307/1‑143 (MQ=11)
             caCTCATCTTCGGCTGATGTTTGAGATACTTGCTCTTTAAAAATCTGGATCACGCTGAAAATTGAAACACCGAACACCGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCgg                         <  1:61629/142‑1 (MQ=11)
                tCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGtt                      >  1:267670/1‑143 (MQ=32)
                  aTCTTCGGGGGATGTTTGAGATAGTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAATACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTtgt                    <  1:432605/143‑1 (MQ=12)
                    gttCTGGTGATGTTTGAGATATGTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGa                  <  2:507372/142‑1 (MQ=17)
                    cTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGTATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGa                  <  2:28990/143‑1 (MQ=17)
                    cTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAGCATCTTCAGGTTGCGa                  >  2:286424/1‑143 (MQ=12)
                            gATGTGTGAGGTATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGTAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGACTCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGc          <  2:259846/143‑1 (MQ=255)
                                tttGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGGTAAGCGACt      >  1:569187/1‑143 (MQ=17)
                                   gagaTATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTACGCGACTAAg   >  1:207514/1‑143 (MQ=17)
                                    agaTATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc  <  1:789834/143‑1 (MQ=32)
                                                                                   |                                                                                               
CTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGC  >  NC_000913/3943541‑3943719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.