Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 43 [0] [0] 43 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)42 (0.950) 41/262 0.1 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATC  >  NC_000913/3815801‑3816079
                                                                                                                                            |                                                                                                                                          
acctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgcctccttctgcCGt                                                                                                                                          >  1:17111‑M2/141‑143 (MQ=255)
  ctgcttgctaagcgcaaattcaataaactggcgctgatatggttacatgccttcgctcctcatcttacttttctacagacaaaaaagaggcgactcatcagtcgccttaaaaatcaggttgccagcgccgcctactgcCGTcc                                                                                                                                        >  2:691810‑M2/139‑143 (MQ=255)
   cgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaacaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                                       <  1:448060‑M2/6‑1 (MQ=255)
          taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACt                                                                                                                                <  1:601349‑M2/13‑1 (MQ=255)
             gcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTtcc                                                                                                                             >  1:4547‑M2/128‑142 (MQ=255)
                   attcaataaactggcgctgatctggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg                                                                                                                       <  2:126316‑M2/22‑1 (MQ=255)
                      caataacctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                                                                    <  2:754720‑M2/25‑1 (MQ=255)
                       aataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGcc                                                                                                                   >  1:705748‑M2/118‑143 (MQ=255)
                        ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCACTTATGCgcct                                                                                                                  >  1:205608‑M2/117‑142 (MQ=255)
                               ggcgctgatatggtttcatgccttcgctcctcatcttactttcatacagacaaaaaaaaggcgactcgtcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                           <  1:539043‑M2/34‑1 (MQ=255)
                                    ttatatggtttcatggcttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                                                                                      <  2:33949‑M2/39‑1 (MQ=255)
                                      atatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCCGtcatca                                                                                                    >  2:79274‑M2/103‑143 (MQ=255)
                                             ttcatcccttcgctcctcatcttacttttctacagacaaaaaaaaggccactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                                                             <  2:332005‑M2/48‑1 (MQ=255)
                                                  gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGt                                                                                        >  2:167230‑M2/91‑143 (MQ=255)
                                                   ccttcgctcctcatcttacttttctacagacaaaaaaaaggcgtctcatcaggcgctttaaaagtccgtgtgccagcaccgccttcggcCGGCCCCGGCACTTCAATGTGGCGCCCGTCTTCGGTCATCACTACGTTCATGTc                                                                                       <  1:839139‑M2/54‑1 (MQ=255)
                                                    cttctctccccatcttgcttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                                                                      <  1:391272‑M2/55‑1 (MQ=255)
                                                        gctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct                                                                                  >  1:298830‑M2/85‑143 (MQ=255)
                                                          tcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTctct                                                                                >  1:569903‑M2/83‑143 (MQ=255)
                                                           cctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTGCGTTCATGTCGGTCTCTg                                                                               >  1:160055‑M2/82‑143 (MQ=255)
                                                           cctcatcttacttctctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg                                                                               <  2:759421‑M2/62‑1 (MQ=255)
                                                            ctcatccgactcttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGTTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGc                                                                              <  1:517563‑M2/63‑1 (MQ=255)
                                                             tcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCg                                                                             <  2:69855‑M2/64‑1 (MQ=255)
                                                               atcttacttttgtacagacacaaacaaggcggctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCGGTCTTCGGTCATCACTACGTTCATGTCGGTGTCTGCGGc                                                                           <  2:312145‑M2/66‑1 (MQ=255)
                                                                           tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                               >  1:406125‑M2/66‑143 (MQ=255)
                                                                           tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                               <  1:852604‑M2/78‑1 (MQ=255)
                                                                              agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGGCTTCGGTCATCACTACGTTCATGTCGGGCTCTGCGGCCGAGTCTTCAACGTa                                                            >  1:654458‑M2/63‑143 (MQ=255)
                                                                               gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAt                                                           >  1:284907‑M2/62‑143 (MQ=255)
                                                                                   aaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGCTGCGCCCGGCGTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCCACGTATTCCa                                                       >  1:197136‑M2/58‑143 (MQ=255)
                                                                                    aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAg                                                      >  1:691560‑M2/57‑143 (MQ=255)
                                                                                     aaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGGACTTCAATGATGCGCCCGTCTTCGGTCATCACTGAGTTCATGTCGGTCTCTAAGGCAGAGCCTGCAACGTCTTCCAGa                                                     >  2:274207‑M2/56‑143 (MQ=255)
                                                                                                tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCGGAGTCTTCAACGTATTCCAGATCGCCAACCGc                                          >  1:783970‑M2/45‑143 (MQ=255)
                                                                                                   tcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCGAAGCGCTTc                                       >  2:154881‑M2/42‑143 (MQ=255)
                                                                                                    cagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCg                                      >  2:155868‑M2/41‑143 (MQ=255)
                                                                                                     agtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGc                                     >  1:288741‑M2/40‑143 (MQ=255)
                                                                                                       tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTTGGTTCACCCCCCTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCg                                   >  1:397817‑M2/38‑143 (MQ=255)
                                                                                                       tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTGCGGTCATCACTACGTTCATGTCGGTCTCTGCGACAGAGTGTTCCACGTATTCCAGATAGCAACCCGCGTCGCCg                                   >  2:460530‑M2/38‑143 (MQ=255)
                                                                                                         gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGCCTTCAACGCATTCCAGCTCGCAAACCGCTGCGCCgtc                                 >  2:638307‑M2/36‑142 (MQ=255)
                                                                                                                aaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAAGCCGACCCGTTCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAAtt                          >  1:629545‑M2/29‑143 (MQ=255)
                                                                                                                      gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCCACGTATTCCATATCGCAAACCGCTTCGCCGCTCACAATTCCGACa                    >  2:389533‑M2/23‑143 (MQ=255)
                                                                                                                      gtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACa                    <  1:185496‑M2/121‑1 (MQ=255)
                                                                                                                             agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCACAAACCGCTTAGCCGTTAACAATTCCGACAGAAACTg             >  1:522520‑M2/16‑143 (MQ=255)
                                                                                                                               cgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTCCg           >  1:693107‑M2/14‑143 (MQ=255)
                                                                                                                                        ctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATc  <  1:603589‑M2/139‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                          
AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATC  >  NC_000913/3815801‑3816079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.