New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	700044 =	50 (1.010)	3 (0.060)	3/278	7.7	5.7%	coding (283/753 nt)	umpH	UMP phosphatase
	?	NC_000913	700060 =	50 (1.030)					coding (267/753 nt)	umpH	UMP phosphatase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCACCGTTAGCGACGAAATAGGCTGCTTTATGCATCATGTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCGGTTCGCCAGATCTTGCCCAGTC  >  NC_000913/699913‑700186                                                                                                                                    |                                                                                                                                                tGCACCGTTAGCGACGAAATAGGCTGCTTTATGCATCATGTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGc                                                                                                                                      <  1:882082/143‑1 (MQ=255)    aCCGTTAGCGACGAAATAGGCTGCTTTATGCATCATGTCCCAGTTGTAGAAACGCGTTTCGCCAACAATCACGAAATCAGGGTACACATCGGTAATAGTGAAACCGGCTTTGTACCGTGCATGAAGCAGTGCGCCTTGGCcca                                                                                                                                   >  1:269975/1‑143 (MQ=255)     gcGTTAGCGACGAAGTGGGCTGGTGTATGCATCATGTCGCAGTTGTGGGAACGCGTTTGGCGAACAATGACGAAATCAGGGTGCACAGCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCccac                                                                                                                                  <  2:832275/142‑1 (MQ=255)                 aaaTAGGCTGCTTTATGCATCATGTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCttt                                                                                                                     >  2:800571/1‑143 (MQ=255)                       gctgctTTATGCATCATGTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGcc                                                                                                               <  1:827425/143‑1 (MQ=255)                            tttATGCATCATGTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCACGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCt                                                                                                          <  1:861815/143‑1 (MQ=255)                              tATGCATCATGTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTgg                                                                                                        >  1:115752/1‑143 (MQ=255)                               ctGCATCATGGTCCAGTTGTAGCAACGCGTTTCGCCAACAATGACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCAAATACA‑TACGCTTTCTTGCCTTCCTGGc                                                                                                       <  2:793641/142‑1 (MQ=255)                               aTGCATCATGTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGCTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGc                                                                                                       <  1:361430/143‑1 (MQ=255)                               aTGCATCATGGCGCGGTTGTAGGAACGCGTTTCGGCAACGATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTGCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGc                                                                                                       <  2:859310/143‑1 (MQ=255)                                  catcatGTCCCAGTTGTAGGACCGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTGTGTACAGTTCATGAATCAGTGCGCCTTCGCCCCCCACA‑TACGTTTTCTTGCCTTCCTGGCGAc                                                                                                    <  2:112044/143‑1 (MQ=255)                                    tcatGTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGATCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCCCA‑TACGCTTTCTTGCCTTCCTGGCGACGc                                                                                                  >  1:147397/1‑143 (MQ=255)                                    tcatGTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACAAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTAATGAATCAGTGCGCCTTCGCCCACCACA‑TACACTTTCTTACCTTCCAAGCGACGc                                                                                                  >  2:93688/1‑143 (MQ=255)                                        gTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGGGAAACCGGCTTTGTACAGTTCGTGAATCCGGGCGCCTTCGCCGACCACA‑TCCGCTATCTTGCCTGCCGGGCAACGCAgaa                                                                                              >  1:487690/1‑141 (MQ=255)                                         tCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGACATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTCTCTTGCCTTCCTGGCGACGCAGCaa                                                                                             >  2:686229/1‑143 (MQ=255)                                                 gTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCGTGGCGACGCAGGGAATCGGCAg                                                                                     >  1:215396/1‑143 (MQ=255)                                                   aGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TCCGCTTTCTTGCCTTCCTGGCGACGCCGGAAATCGGCAGTc                                                                                   >  2:348319/1‑143 (MQ=255)                                                   aGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGGCGCAGGCAATCgggcgtc                                                                                   >  1:607506/1‑138 (MQ=255)                                                     gaccgcgTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTTTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGc                                                                                 <  1:458841/140‑1 (MQ=255)                                                     gAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGTGACGCAGGAAAAAGGCAGTCGc                                                                                 >  1:560973/1‑143 (MQ=255)                                                              tcaccAACTAGCACGAATTCAGGGTTCACATCGGTAATATTGGAACCGGCTTTGTACAGTTCGTGACAGCGGGCGGCTT‑GCCCAACAAATTTCGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCaga                                                                        <  2:108734/140‑1 (MQ=255)                                                              ggggcaacaaTCACTACAGCAGGGTTCACATCGGGAATAGCGAAACCGGCTTTGTACAGTTCATGAATCAGTGTGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCaga                                                                        <  2:661239/139‑1 (MQ=255)                                                               cGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCagag                                                                       <  1:391459/143‑1 (MQ=255)                                                                         cACGAAATCAGGGCTCACATCGGTAATAGTGAAACCGGCGTTGTACAGTTCATGAGTCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAaca                                                             <  2:351614/143‑1 (MQ=255)                                                                          aCGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCCGGCACTCGGCCGTCGCCCTCGCCGAGGTCTGAAacac                                                            >  1:226300/1‑143 (MQ=255)                                                                          aCGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATCAAaccc                                                            >  1:497585/1‑141 (MQ=255)                                                                               aTCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAATGAGCCTTCTCCCACCAAA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGcaga                                                       >  1:707593/1‑140 (MQ=255)                                                                                     cttCACAGCGGTAAGAGTCAAACCGGCATTGCACAGCTCATGAACCAGTGCGCCATAGCAAACCAAA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGCACATCGGAACTCGGCATCGCAGAGGTATAAAACACGCTGTCAGGTa                                                 <  2:153663/142‑1 (MQ=255)                                                                                      gtCACATCGCTAATAGTGAATCCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCGTTCTTGCCTTCCTGGTGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTAc                                                <  2:413815/142‑1 (MQ=255)                                                                                                      tGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCCGAGGTATCCAACACGCTGTCGGGTACGTCGACACCTGCGGTg                                >  1:430036/1‑143 (MQ=255)                                                                                                       gAAACCGGCTTTGTACGGTTCATGAAGCAGTGCGACATAGACCACCACA‑TGCGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTgg                               <  1:807810/143‑1 (MQ=255)                                                                                                        aaaCCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACAt                                              <  2:558475/127‑1 (MQ=255)                                                                                                        aaaCCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACAt                                              >  1:558475/1‑127 (MQ=255)                                                                                                            cGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACACTGTCAGATACATCGACACCTGCGGGAGCAAAg                          >  1:511176/1‑143 (MQ=255)                                                                                                             gggtttGTACAGTGCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGc                         <  1:430384/140‑1 (MQ=255)                                                                                                             ggCGTTGTACAGTGCATGAATCAGTGCGCATTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGc                         <  1:194317/143‑1 (MQ=255)                                                                                                              gttttGTACTGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTGCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCg                        <  1:745358/141‑1 (MQ=255)                                                                                                                   gTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACCCCTGCGGTGGCAACGCGGCTCg                   >  2:693450/1‑143 (MQ=255)                                                                                                                    tacgtttCATGAATCAGTGCGCCTTCGCCCTCCACA‑GACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATGGACACCTGCGGTGGCAAAGCGGTTCGc                  <  2:128597/138‑1 (MQ=255)                                                                                                                    tACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCGGTTCGc                  >  1:883663/1‑143 (MQ=255)                                                                                                                     aCAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGGCACCTGCGGTGGCGAAGCGGCTCGcc                 >  1:62929/1‑143 (MQ=255)                                                                                                                      cAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCGGTTCGCCa                <  1:847853/143‑1 (MQ=255)                                                                                                                        gTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAACCGCCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCGGTACGCCAgc              >  2:644405/1‑142 (MQ=255)                                                                                                                        gTTCATGAATCAGTGCGCCTTCGCCAACCACA‑TATGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGGGGCAAAGCGGTTCGCCAGa              >  2:499144/1‑143 (MQ=255)                                                                                                                         ttCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCACAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAACGCGGGTCGCCAgct             >  2:705646/1‑141 (MQ=255)                                                                                                                         ttCAGGAATCAGTGCGCCTTCGCCAACCACA‑TACGCTTTCTTGCCTTCGTGGCGACGCAGGAAATCGGCAGTCGCCAGCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCGGTTCGCCAGAt             <  2:373001/143‑1 (MQ=255)                                                                                                                          tCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTACGGTGGCAAAGCGGTTCGCCAGATc            >  1:714742/1‑143 (MQ=255)                                                                                                                              gAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCGGTTCGCCAGATCTTGc        <  1:381611/143‑1 (MQ=255)                                                                                                                                aTCAGTGCGCCTTCGCCCAGCACA‑TACGCTGTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCGGTTCGCCAGATCTTGccc      <  2:147397/143‑1 (MQ=255)                                                                                                                                aTCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCGGTTCGCCAGATCTTGccc      >  1:571460/1‑143 (MQ=255)                                                                                                                                    gTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCGGTTCGCCAGATCTTGCCCAGTc  <  1:485038/143‑1 (MQ=255)                                                                                                                                    |                                                                                                                                                TGCACCGTTAGCGACGAAATAGGCTGCTTTATGCATCATGTCCCAGTTGTAGGAACGCGTTTCGCCAACAATCACGAAATCAGGGTTCACATCGGTAATAGTGAAACCGGCTTTGTACAGTTCATGAATCAGTGCGCCTTCGCCCACCACA‑TACGCTTTCTTGCCTTCCTGGCGACGCAGGAAATCGGCAGTCGCCATCGCAGAGGTATAAAACACGCTGTCAGGTACATCGACACCTGCGGTGGCAAAGCGGTTCGCCAGATCTTGCCCAGTC  >  NC_000913/699913‑700186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.