New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3423665 =	NA (NA)	15 (0.310)	12/280	3.7	24.1%	intergenic (‑10/+3)	thrV/rrfD	tRNA‑Thr/5S ribosomal RNA of rrnD operon
	?	NC_000913	= 4171803	48 (0.970)					intergenic (+47/‑254)	rrfB/murB	5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
Rejected: Coverage evenness skew score above cutoff.

GCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAT  >  NC_000913/3423526‑3423800                                                                                                                                             |                                                                                                                                        gcTACTGCAGCCACCCAAATTCTTTTCTAATCTGCCGAACGTTAACCTCAAAAGTGGTGCTGATACGCAGAGTCGAACTGGTGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGa                                                                                                                                      <  1:273503/143‑1 (MQ=25)    aCTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCCATCAGCTA‑TGAGCGATATCAGCACGCTAAATTTGATGc                                                                                                                                   >  1:376075/1‑143 (MQ=38)          gacAGACAAATGCGTGTCTAACCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCa                                                                                                                             <  1:373618/141‑1 (MQ=255)             aGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGtt                                                                                                                          >  1:476430/1‑143 (MQ=255)                          tCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACGGGGGACCTCACCCTTACCAAGTGTGTGCTCT‑ACCAACTGACCCATATCAGCACGTTAAATTTGATGTCTGGCAGTTCCCTACTCTCGCa                                                                                                             <  2:359744/143‑1 (MQ=255)                           cTAATCTGCCGAACTTGAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCAt                                                                                                            <  1:167248/143‑1 (MQ=255)                              aTCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATggg                                                                                                         <  1:861267/143‑1 (MQ=255)                                ccgCCGAACTTTAACGTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGga                                                                                                       <  1:530388/141‑1 (MQ=255)                                    cGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGCGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCACTACTCTCACATGGGGAGAcc                                                                                                   >  2:571527/1‑143 (MQ=255)                                        cTTTAACCTAAAAAGTGGTGCTGATACCCCGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATCGGGAGACCCcac                                                                                               >  1:548798/1‑143 (MQ=255)                                        cTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGAGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGAGAGACCCcac                                                                                               >  1:549997/1‑143 (MQ=255)                                               cTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCa                                                                                        >  2:820046/1‑143 (MQ=255)                                               cTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCCCGCATGGGGAGACCCCACACTACCa                                                                                        >  2:875656/1‑143 (MQ=255)                                                  aaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTACATTTGATGCCTGGCAGTTCCCTACTCTCGCCTGGGGAGACATCACACTAACATCg                                                                                     >  1:298513/1‑143 (MQ=37)                                                   caaGTGGTGCTCATACCCAGAGTCGAACTGGGGACCTCACCTTTACTAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCgg                                                                                    <  1:540463/142‑1 (MQ=255)                                                     aGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCACACACTACCATCGgcg                                                                                  >  1:445632/1‑143 (MQ=255)                                                      gtggtgCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGgcgc                                                                                 <  1:547727/143‑1 (MQ=255)                                                           gCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCCAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGCTGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCTCACACCACCGTCGGCGCTACgg                                                                            >  2:766355/1‑143 (MQ=37)                                                                tACGCAGCGTCGAACGCGGGGGCTCACTCTTACCAAGGGTGCGCTCT‑ACCAACTGCGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGttt                                                                       <  1:332270/143‑1 (MQ=21)                                                                   ccAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGAACGCTCAAATTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACGCCACAATACCATCGGCGCTACGGccgatcac                                                                    >  2:280165/1‑136 (MQ=25)                                                                           gAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCCCTCCTGCGt                                                            >  2:41488/1‑143 (MQ=255)                                                                           gAACTGGGGACCTCACACTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTAGATGCCTGGCAGTTCCCTACTCTCGCATGCGGGGACCGCACACTACCATCGGCGCTACGGCGTTTCCCTGCTGCGt                                                            >  1:84742/1‑143 (MQ=25)                                                                            aaCTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGtt                                                           >  1:892200/1‑143 (MQ=255)                                                                                 gggACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTCCGGCGCTTCACTCCTGAGTCCGGCa                                                      >  2:522644/1‑143 (MQ=255)                                                                                 gggACCGCACCCTTACCAAGGGGGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCa                                                      <  1:726986/143‑1 (MQ=255)                                                                                      cTCAGCTTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCCCACTACCCTCGGCGCCAGGGCGCTCGACCTCTGAGTTCGGCaggagg                                                 >  2:845538/1‑138 (MQ=21)                                                                                      cTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGGGTTAGGCATgggg                                                 >  1:744991/1‑143 (MQ=255)                                                                                      cTCACCCTTACCAAGGGGGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCACCGGCCCCACGCCCATGCACTCATGAGTTCGCCATaggg                                                 >  2:200691/1‑143 (MQ=21)                                                                                       tCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGt                                                >  2:7576/1‑143 (MQ=255)                                                                                       tCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCCTTTCACTTCTGAGTTCGGCATTGGGt                                                >  1:732007/1‑143 (MQ=255)                                                                                           ccTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTGCCATCGGCGCTACGGCGTTTCACTTCTGAGCTCGGCATGGGGTCAgg                                            >  2:742412/1‑143 (MQ=255)                                                                                           ccTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGCTGCACTTCTGAGTCCGGCCTCGGGTCAgg                                            >  2:465099/1‑143 (MQ=21)                                                                                             ttACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGATTCCCTTCTGAGTTCGGCACGGGGTCAGGTg                                          >  2:72505/1‑143 (MQ=255)                                                                                             ttACCAAGGCTGCGCGCT‑ACCAGTTGCGCCATATCCGCTCGCTATATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACGATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTg                                          <  1:551497/143‑1 (MQ=14)                                                                                               ggtaaGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACGCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGCTTCACTTCGGCGTTCGGCGTGGCGTCAGGCggg                                        >  2:603232/4‑143 (MQ=18)                                                                                                          gcTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGTGCCAGGTGGGCCCACCGCGCt                             >  1:574080/1‑143 (MQ=255)                                                                                                            tct‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGGCAGGTGGGCCCACCGCCCtcc                           >  1:362213/1‑141 (MQ=255)                                                                                                            tct‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACAATCGGCGCTACGGCGTTTCACTTCTGAGTACGTCATGGGGTCAGGTGGGACCACCGCGCTAc                           >  1:457233/1‑143 (MQ=255)                                                                                                                 ccAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCCCACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCCCTACGgcc                       >  2:782638/1‑143 (MQ=255)                                                                                                                          ccATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCGTGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGGCAGGCaa              >  1:40053/1‑143 (MQ=255)                                                                                                                          ccATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCaa              >  1:60823/1‑143 (MQ=255)                                                                                                                               tCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTCCGGCCGCCAGCCAAATTCt         >  1:163569/1‑143 (MQ=255)                                                                                                                                   cACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCCGGCGAATTCTGttt     >  2:225334/1‑143 (MQ=25)                                                                                                                                      gCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCCGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCCGGCAAACTCTGTTTTAt  >  2:80784/1‑143 (MQ=12)                                                                                                                                             |                                                                                                                                        GCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCT‑ACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAT  >  NC_000913/3423526‑3423800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.