New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4094338 =	NA (NA)	21 (0.510) +ACAAGTGCCTTATCCGGCCTACA	7/238	4.6	NA	noncoding (23/402 nt)	REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
	?	NC_000913	= 4094682	NA (NA)					noncoding (367/402 nt)	REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CCCAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGC  >  NC_000913/4094197‑4094468                                                                                                                                              |                                                                                                                                   cccAGGCTGTCAGGTAGGGGTCGGTGGTGGCTTTGATCATTCCGTGGACATACGTGGACTGGGTAATGCTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCgcgc                                                                                                                                   <  2:59616/143‑1 (MQ=255) cccAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGTGTATTGTTTTTCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCgcgc                                                                                                                                   <  1:223775/143‑1 (MQ=255) cccAGACATCCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCAGGGACAAACCAGGACGGAGTAATGTTTGGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGACGCACGACCCGTAGGCCGGATAAGGCGCTCgcgc                                                                                                                                   <  1:832858/143‑1 (MQ=255)   cAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTCGGCCGCCACATTCGCTCGcgccg                                                                                                                                 >  2:537333/1‑143 (MQ=255)   cAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTTGcgccg                                                                                                                                 >  1:877157/1‑143 (MQ=255)   cAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGcgccg                                                                                                                                 >  1:90940/1‑143 (MQ=255)          gcaggcaggCGTCGGTGGGGGCTTTGTTCATTCCCTGGACAACCGAGGGCTGCGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCgg                                                                                                                          <  2:633443/142‑1 (MQ=38)              ccAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATGAGGCGCTCGCCCCGCGTCCGGcagt                                                                                                                      >  1:51928/1‑141 (MQ=255)                aGGCGTCGGTGGTGGCTTTGATAATTACCTGGACAAACGAGGAGTGAGTAATGTTTTGCATGTTATGTGTTCCTGTAAATTTGGTGTTGTTGGATGGACGACCTGTAGGGCGGATAAGAGGGTCGTGACGCATCCGGgaatga                                                                                                                    >  2:195232/1‑141 (MQ=255)                 ggccgcGGTGGTGGCATGGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGcaatcaa                                                                                                                   <  1:436823/138‑1 (MQ=255)                     tCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGcc                                                                                                               >  1:446135/1‑143 (MQ=255)                              gCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGAc                                                                                                      >  1:650549/1‑143 (MQ=255)                                      cATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCCTCCGGCAATCAATGCCTGATGCGACGCTGCcgc                                                                                              >  2:20561/1‑143 (MQ=255)                                       aTTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCGCGCGGCGAATCCGGCAATGAATGACTGATGCGACGCTGTcgcg                                                                                             >  1:326996/1‑143 (MQ=255)                                           ccTGGACAAACCAGGACTGAGTAAGGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt                                                                                         <  1:333533/143‑1 (MQ=255)                                            cTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTACTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCCCGCGCCGCGACCGCCACGCAACGCCTGATGgggcgcgggcgccggggc                                                                                        >  2:907360/1‑137 (MQ=255)                                               gACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCa                                                                                     >  1:148180/1‑143 (MQ=255)                                               gACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCa                                                                                     >  2:176965/1‑143 (MQ=255)                                                   caCCAGGACTGAGTAAGGTTTGGCATGTTCTGGGTTCCTGTATATTCGCTGTTGTCGGCTGGGCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGcc                                                                                 <  2:223126/142‑1 (MQ=21)                                                     cgaGGACTGAGTAATGTGTGGCAGGTGCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTa                                                                               <  1:216693/141‑1 (MQ=255)                                                      cAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCCACCAATGCCTGGTGCGACGCTGTCGCCGCTTATCAGGCCtcc                                                                              >  2:789420/1‑141 (MQ=38)                                                        ggACGGGGTAATGTTTTGCATGTTCTGTGTTCCTGGAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACaa                                                                            <  2:605973/143‑1 (MQ=255)                                                         gACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATACGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTCTCAGGCCTACAAc                                                                           >  1:139169/1‑143 (MQ=255)                                                            tGAGTTGTGTTTCGCATGTGCTGTGTTCCGGTAAATGCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTAt                                                                        <  2:49266/143‑1 (MQ=21)                                                            tGAGTAATGTTTTGCATGTTCTGTGTTCCTGTGAATTCGGTGTTGTCGGATGCACGACCAGTAGGCCGGATAAGCCGCTCGTGCCTCATCCGGCAATCAATGCCTGATTCGGCGCTGTCGCGTCTTATCAGGCTGACGACTAt                                                                        >  1:515555/1‑143 (MQ=21)                                                                             gTTGTGTGTTCGTGTGAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATGAGGCGCTCGCGCCGGATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCt                                                       <  2:296161/143‑1 (MQ=18)                                                                                  ctgcgccTTTAAGTGCGGGGCTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCACTGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATaa                                                  <  2:332403/138‑1 (MQ=17)                                                                                   tgtTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCACTCCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATacg                                                 >  1:841705/1‑141 (MQ=255)                                                                                   tgtTCCTGTAAATTCGATGTTCTCGGATGCACCATGCGCAGGCCGGATAGGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCCTATCAGGCCTACCACTATTGCCGCCCTGTCGGCCTCAGAAg                                                 >  2:406826/1‑143 (MQ=17)                                                                                    gtTCCTGTAAATTCGGCGTTGTGAGAGGCGCGACCCGTAGGCCGGATAAGGCGCGCGCGCCGCATCCGGCAATCAATGCCGGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAgg                                                <  1:738162/143‑1 (MQ=17)                                                                                     ttCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGc                                               >  1:365676/1‑143 (MQ=255)                                                                                       ccTGTAAATTCGCTGTGGTCCGATGCACGACCCGTAGGCCGGATAAGTCGCTCGCTCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGTCCTATAACTATTGCCGACCTGTAGGCCTGATAAGGCAc                                             <  2:760692/143‑1 (MQ=18)                                                                                        cTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACCAATATTGCCGACCGGTAGGGCTGATAAGGCaac                                            >  1:103962/1‑141 (MQ=255)                                                                                           tAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTtgt                                         >  1:245906/1‑143 (MQ=255)                                                                                              aTTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCCGCCGGTCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATACGGCACTCGGGcc                                      >  2:541064/1‑143 (MQ=18)                                                                                               tgcGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCg                                     <  1:830733/141‑1 (MQ=255)                                                                                                       tgtCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCTCGCCGCATCCGGCAATCAATGCCCGCGGCGACGCTGTCGCGCCTTGACCGGCCTACCACTGTGGCCGGCCAGTGGGCCCGATACAGCCCTGGTGCCGCAggcggc                             >  2:196074/1‑143 (MQ=12)                                                                                                       tgtCGGAGGAAGGACCCGTAGGGCGGATAAGGCGCCCGGGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTCTTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGc                             <  1:490397/143‑1 (MQ=14)                                                                                                         acGGAAGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAAGCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGcaa                           <  1:113761/142‑1 (MQ=255)                                                                                                          cGGGTGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGAGGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGcaat                          <  1:851887/143‑1 (MQ=255)                                                                                                            gATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCCCATCCGGcaagca                        >  1:462436/1‑143 (MQ=255)                                                                                                             aTGCAGGACCCGTAGGCCGGGTAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGcaatcaa                       <  2:497278/143‑1 (MQ=255)                                                                                                                 aCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTGTTAGCAGGCCTACAACTATTGCCGAGCTGTAGGCGTGATAGGGCACGTGTGTCGGATGCGGCaatgaatggg                   >  2:819184/1‑141 (MQ=14)                                                                                                                 aCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGcc                   >  1:567898/1‑143 (MQ=255)                                                                                                                 aCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGCCCTACAACTATTGCCGACCTGTCGGCCTGATAAGGCACTTGTGCCGCATCCGCCAATCAATGcc                   >  1:841517/1‑143 (MQ=255)                                                                                                                   gACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGGATCACGCAATCAATGCATg                 >  2:150080/1‑143 (MQ=255)                                                                                                                       cggcggCCGGAGAAGGGGCTCGCGGCGCGTCCGGCAATCAATGCCTGAGGCGACGCTGTGGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGc             <  2:184351/139‑1 (MQ=14)                                                                                                                       cGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGc             >  1:55990/1‑143 (MQ=255)                                                                                                                       cGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGc             >  2:718643/1‑143 (MQ=37)                                                                                                                        gTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTATGCCTGATAAGGCACTTGTGCCGCATCCGGCAACGCATGCCTGATGCg            >  1:874488/1‑143 (MQ=255)                                                                                                                        gTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGCTAAGGCACTTGTGCCGCATCCGGCAATCAATGCCAGATGCg            >  1:66183/1‑143 (MQ=255)                                                                                                                            gCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGc        >  1:282153/1‑143 (MQ=255)                                                                                                                              cGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGCTAAGGCGCTCGTGCCGCCTCCGGCCATCACTGCCCGCTGCCACGCTg      >  2:304110/1‑143 (MQ=14)                                                                                                                                gATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTCCCGACCTGTAGGCCTGATAAGGCACCCGTGCCGCATCCGGCAATCACTGCCTGATCCGACGccctc    >  2:194991/1‑139 (MQ=14)                                                                                                                                 aTAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCGATCAATGCCTGATGCGACGCTGTcg   >  1:908355/1‑143 (MQ=255)                                                                                                                                  gagggCGCCCGCGCCGCATCCCGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc  <  2:148180/140‑1 (MQ=255)                                                                                                                                          tCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGc                                                                     >  1:827/1‑68 (MQ=37)                                                                                                                                              |                                                                                                                                   CCCAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGC  >  NC_000913/4094197‑4094468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.