Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,909,312 Δ774 bp [pstA][pstC] [pstA], [pstC]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3909312 3910085 774 33 [0] [0] 32 [pstA]–[pstC] [pstA],[pstC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39093110 (0.000)32 (0.680) 29/270 0.7 100% coding (129/891 nt) pstA phosphate ABC transporter permease
?NC_000913 3910086 = 0 (0.000)coding (313/960 nt) pstC phosphate ABC transporter permease

AAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAG  >  NC_000913/3909169‑3909435
                                                                                                                                              |                                                                                                                            
aaaTTGCCAGCCCGCTACCCGCCAGAGCGTTCGCCGTACCGCCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAG                                                                                                                              <  2:523432‑M1/143‑1 (MQ=255)
           tcgCTACCCGCCGGGGCGTTCGCCAGACCTCCACCCTCCGTATGGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctca                                                                                                                   <  2:18522‑M1/142‑12 (MQ=255)
               tACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAAGCCAGATCAGCCAGgcgcaagctcagtcg                                                                                                               >  1:709390‑M1/1‑128 (MQ=255)
                    gCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaac                                                                                                          >  1:136225‑M1/1‑123 (MQ=255)
                     ccAGGGCGTTCGCCAGCCCACCACCTTCCGTATCGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaaca                                                                                                         <  2:571108‑M1/143‑22 (MQ=255)
                         agCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTAGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggc                                                                                                     >  1:177989‑M1/1‑118 (MQ=255)
                           cGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcga                                                                                                   <  1:749181‑M1/143‑28 (MQ=255)
                                  cAGCCCACCATCCTCCGTATTGGGCGGCGGCGTCACGGCAGTGAACAGCGCCAGCGACCTACCGTCGATACCGCGAGTGATCGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacaggacgataccgaa                                                                                            <  2:448651‑M1/143‑35 (MQ=255)
                                  cAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacaggg                                                                                                      >  2:62032‑M1/1‑109 (MQ=255)
                                  cAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacaggg                                                                                                      <  1:62032‑M1/133‑25 (MQ=255)
                                    cagcaccgccttcCGTATGGGGCGGCGCCGCCACTTCAGTGAACAGCGCCAGCGACATCCCGTGGATACCGCGAGTGATGGTGGACATTAAAATCCATATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgacac                                                                                          <  1:366892‑M1/140‑37 (MQ=255)
                                             cTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccggga                                                                                 >  1:536161‑M1/1‑98 (MQ=255)
                                                   tATTGCGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATTGTGTACATTATAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcga                                                                           <  1:447853‑M1/143‑52 (MQ=255)
                                                   gagtgggCGGCGACGGAAGTTCAGTGAACGGCGCCAGCGACATACCGTCGACACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcga                                                                           <  1:878495‑M1/140‑52 (MQ=255)
                                                          cggcggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcag                                                                    >  1:297526‑M1/1‑85 (MQ=255)
                                                            gcggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcg                                                                  <  1:721482‑M1/143‑61 (MQ=255)
                                                                       tCAGTGGACTGCGCCAGAGAGATAGGGTCGATACCGAGAGTGATTGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaa                                                       <  2:318403‑M1/143‑72 (MQ=255)
                                                                          gTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatgagcagcgcgacaaacgaagtc                                                    >  2:786944‑M1/1‑69 (MQ=255)
                                                                             aaCAGCGCCAGCGACATACGGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcacc                                                 <  1:495887‑M1/143‑78 (MQ=255)
                                                                               gcacgccagCGCCTTAGCGTCGCTACCGGGGGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaaggtcagtcaggaacagggctataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaa                                               <  2:762033‑M1/140‑80 (MQ=255)
                                                                                 gcgcCAGCGACAGACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacg                                             <  2:34100‑M1/143‑82 (MQ=255)
                                                                                     cAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtacc                                         >  1:831780‑M1/1‑58 (MQ=255)
                                                                                     aagCGACATACCGTCGATACAGCGAGGGATGGTGGACAGTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtacc                                         <  1:810648‑M1/142‑86 (MQ=255)
                                                                                        cGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcacggggacggcgatcagcggcgagacaaaagaagacaccaacgtacggta                                      >  2:366751‑M1/1‑55 (MQ=255)
                                                                                            aTACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaaccggtcggtaccgaaactcaccgggacgacgatcagcagagggctcaacgacgtcaccaacgtaccgtagagc                                  >  1:563231‑M1/1‑51 (MQ=255)
                                                                                             gacCGTCGAGACCGCGAGTGATGGTGGACAAGAAAATCGAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcg                                 <  1:294649‑M1/142‑94 (MQ=255)
                                                                                                  tCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagagcggcacc                            >  1:542569‑M1/1‑45 (MQ=255)
                                                                                                     aTACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagc                         >  1:534311‑M1/1‑42 (MQ=255)
                                                                                                     aTACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcaacagcgcgacaaacgaagtcaccaacgtacgctagctcggcaccagc                         >  2:416693‑M1/1‑42 (MQ=255)
                                                                                                                    gtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcg          >  2:719445‑M1/1‑27 (MQ=255)
                                                                                                                    gtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgacaaacgcagtcaccaacgtaccgtagctcggcaccagcgccccggagatatcg          >  2:719451‑M1/1‑27 (MQ=255)
                                                                                                                          aTTAAACTCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaagctcaccgagcaggctgtgttcagcgcgagaaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggt    <  1:903679‑M1/143‑123 (MQ=255)
                                                                                                                            tAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcgacaccagcgccccgtagctatcgtgcggcgc  >  1:587969‑M1/1‑19 (MQ=255)
                                                                                                                                              |                                                                                                                            
AAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAG  >  NC_000913/3909169‑3909435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: