New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	7 (0.140)	36 (0.800)	31/250	0.4	78.1%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	1209619 =	14 (0.310)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1207947‑1207790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA  >  NC_000913/1209619‑1209759                                                                                                                                                                                                                                                                                                             TCCATCCCCCCCACAGGGAGATGCTTTTGCGGCATTCCACCCCCCCTGAATGATTACTGATTGCTCAATACCACCCATCATAACCGGTATCGCTATGAACCCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTC                                                                                                                                                              <  2:275762/143‑1  CCATCCCCCCCAGAGTCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCC                                                                                                                                                             <  1:34095/143‑1        CCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCC                                                                                                                                                       >  1:242687/1‑143           CCAGAAGAAGAGGCTGTGGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAA                                                                                                                                                    <  1:111890/143‑1            CAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGCATGTTTACTTATTTCTCAATACCACCAATCGTAACCGGTATAGCGATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAA                                                                                                                                                   <  2:103323/143‑1                     ATGGTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTT                                                                                                                                          <  1:846745/143‑1                           TTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAA                                                                                                                                    <  1:638910/143‑1                                     CCACCCCCACTGAATGATGACTGCTTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAT                                                                                                                          <  2:465820/143‑1                                      CACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGATATGAACCCAGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCCTCTCTCAAACCAACGTTTATGAAAAAGAAGAAATA                                                                                                                         >  1:495249/1‑143                                       ACCCCCACTGAATGATTCCTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCCACGTCTCTGAACGTGAAGCAATAA                                                                                                                        >  2:86719/1‑143                                        CCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAC                                                                                                                       <  2:570331/143‑1                                          CCCACTGACTGATTACTGATTGCTGAATACCCCCACTCATAATCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAA                                                                                                                     <  2:105908/143‑1                                                      TTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATC                                                                                                         <  2:108920/143‑1                                                                CTCCATACCCCCATTCCTAACCGGTACAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATTACAAGCAAATGGCATCATTCCTGCTT                                                                                               <  1:42735/143‑1                                                                 TCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTT                                                                                              >  2:176688/1‑143                                                                   AATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTAGTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAACAAATGGCACAATTCCTGCTTTTg                                                                                            >  2:293774/1‑142                                                                     TACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTCCC                                                                                          >  1:613544/1‑143                                                                      ACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA                                                                                         <  2:347760/143‑1                                                                         ACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGG                                                                                      <  2:392299/143‑1                                                                         ACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGG                                                                                      >  2:741280/1‑143                                                                         ACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGG                                                                                      >  1:852874/1‑143                                                                          CCAATCATAACCGGTATAGCTATGCAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGCAAATGAAGAAATAACAAGCAAACGGCATCATTCCTGCTTTTACCAGcag                                                                                     >  2:501577/1‑140                                                                                 TAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAA                                                                              <  1:609793/143‑1                                                                                  AACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTGCGTCTCGCAAACCAACGTTTATGAAAATGAAGACATAACAAGCAGATGGCATCATTCCTGCTTTTACCAGGGGGATTTCAC                                                                             >  1:586687/1‑143                                                                                        TATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGGTGCTGCATTGAGTTTTGCTCCTTCCCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT                                                                       <  2:649470/143‑1                                                                                            GCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATGGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCGTATTG                                                                   >  1:503024/1‑143                                                                                             CTATGAAACCGGTGCGTCCTAATGTAGGCGTTGCTGCATTGAGTTTTGCTCCTTCTCGCAAACCAACCTTTATGAAAATGAAGAAATAACAAGCAAATGGCGTCATTCCTGCTGTTACCAGGCGGATTGACCAAGCGTATGGG                                                                  >  2:58661/1‑143                                                                                              TATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGC                                                                 <  2:431210/143‑1                                                                                               ATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCT                                                                <  1:6662/143‑1                                                                                                 ggaggCGGTGCGTGCTAATGTAGCCGTTGCTGCAGTGAGTTTTGCGCCTTCTCTCAGACCATCGGTTAGGAAAATGAAGAAATAACAAGCAAATGGCATCATTGCTGCTTTTACTAGGGGGATTTAACATGCTTATTGGCTAT                                                              <  2:533809/138‑1                                                                                                       gggGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTGTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGC                                                        <  2:741777/140‑1                                                                                                       GGTTCGTCCTCATGTAGCAGCTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGC                                                        <  2:763684/143‑1                                                                                                          GCGGCCTAATGTAGCCGTTGCTGCCTTGAGTTTTGCTCCTTCTCCCCAACCATCGTTTATGAAAACGAAGAAATACCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTA                                                     <  1:531480/143‑1                                                                                                             TCCTAGTGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCA                                                  >  1:450424/1‑143                                                                                                                      AGCCGTTGCTGCATTGAGTTTTGCTCGTTCTCCCAGTTGAGCTTTCATGAGAATGAAGAAAGGACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAC                                         <  2:905387/143‑1                                                                                                                      AGCCGTTGCTGCATTGAGTTTTGCTCCGTCTCCCAAACCAAACTCTCTTGATATTAAGAACTAAAAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAC                                         <  1:635474/143‑1                                                                                                                            TGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGG                                                                  <  2:184539/112‑1                                                                                                                            TGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGG                                                                  >  1:184539/1‑112                                                                                                                                  ATTTAGTTTTGCGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAT                             <  2:10561/143‑1                                                                                                                                   TTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAACATGAAGAAATAACCCGCACATGGCCTCCTTCCTGCTTTTACCAGGGGGCTTTAACATGCTTATTGGCTATGTACGCGTATCAACACATAACCAGCACAGAAATC                            >  1:139907/1‑143                                                                                                                                              TCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAT                 >  1:79733/1‑143                                                                                                                                                    TCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATAAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTG           >  2:728244/1‑143                                                                                                                                                      CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAA         <  1:741280/143‑1                                                                                                                                                      CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTACTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCACAACACACATATACAACGCCATGCACTGcc         >  2:746606/1‑141                                                                                                                                                           CCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTGTTGAAAGGGGGAGTTAATATGTGCATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGGACTGTG    >  2:111539/1‑143                                                                                                                                                             AACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTGATTGGCTATGTACGCGCATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA  <  1:930426/143‑1                                                                                                                                                                                                                                                                                                             TCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1207947‑1207790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA  >  NC_000913/1209619‑1209759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.