| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 7 (0.140) | 31 (0.690) | 30/250 | 0.5 | 75.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 14 (0.310) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
GTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1207648‑1207805‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGAT < NC_000913/1209602‑1209461 GTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAATTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAGACGGCTCTCGAGAACCT > 1:133828/1‑143 GCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCACATCGGATGGCGCTGTGCAAACGGCTCTCGAAAACCTCGGTTAGGG > 2:53942/1‑143 GCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAGCAGCTTGGTTTGGG > 1:517659/1‑143 cagCCGGTGCCAGCCGGGAGAAGGGGCGGCACGACGCGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGA < 1:160905/140‑1 TCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCCA‑‑GAATCCGTTTGGCGATATCAAATAGGATAGCTCTGTGCAAACGGCTCTCGAGAACGTTGGTTTGGGAGA > 1:388061/1‑143 TCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGCAAACCTTGGTTTGGGAGA > 1:392651/1‑143 TCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGGGCAAACGGCTCTCGAAAGCCCTGGTGTGGGAGA > 1:392197/1‑143 TCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAATAACCTACCGCACTTCGCGCGCTGCGGTTAAGCCGCAA‑‑GAATCCGCGTGGCGATATCAAATCGGATGGCCATGTGCAAACGGCGCTCGAAGACCTTGGTGTGGGAGc > 2:665525/1‑142 ccGCCTGTAGACGCGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTATGCCGCAA‑‑GAATCCGTTGGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTG < 2:50785/141‑1 GCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTACGGCGCAA‑‑GAATCCGTTTGGCGATATCTAATCGGATGGCTCTGTGCAAACGGCTCGCGCAACCCTTGCTTTGGGCGAAGGCTCTGCc > 2:461418/1‑142 GAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACC > 1:789401/1‑143 AAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTGGGTTTGGGAGCAGGCTCTGGCTTACCTat > 2:548945/1‑141 CACGACCAGTTGCTTACGGGAGTGCGCGCGCTGTTGTGAAGGCGGAA‑‑GAAGGCGTGTGGCGATATCAAATCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGGTGGTGTCCC < 2:37218/143‑1 cgacgcGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGACATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGG < 1:72287/137‑1 CCAGTTACTTGCCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCTATATCAAATCGGATGGCACGGTGCAACCGGCTCTCGAAAACCTGGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTC < 2:842406/143‑1 CCAGTTACTTCCCGCACTTCGCGCGCTGCTGTTAAGCCGCCA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTC < 2:846572/143‑1 CCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTC > 1:765568/1‑143 attcCCGCACTTCGCGCGCTGCTGTTAAGCCGAAAACTAATTCG‑‑CGGCTATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCC < 2:656690/139‑1 ACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTACGTGGCCTTC > 1:301320/1‑143 CCGCACCTCGCTCGCTGCTGTTAAGCCGCAC‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCA < 2:865297/143‑1 CTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGGTGGTGTCCCGGTTCCGTGGCCCCCAGCCCCTCCCACAACAGG > 2:383826/1‑143 CGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAA < 1:54504/143‑1 CAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAAT > 1:502506/1‑143 acacGAACCCGTTTGGCGATATCACCTCGGATGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGCGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAA < 2:141286/139‑1 TTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGC > 2:593351/1‑143 TTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCC < 2:376460/143‑1 CGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAGTGGTGCCGCTT > 1:100820/1‑143 GATACCAACGCGGAGGGTACTGTGCCAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTTGCCTTCAGCCACTCCGCCAACAGGCCAGCTTAAGTGCAATGGTGCCGCTTT < 2:116216/143‑1 ATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGATTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTT > 1:572245/1‑143 AAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCCACAGGCTGGCTGAAATGCAATGGTGCCGCTTTCTCTGC > 2:334009/1‑143 TCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGTTTTCGGAGAAGGCTCTGCATTACCTGTTGTTTTCCCGGTTCCGTTGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGA < 1:556561/143‑1 GATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTC > 2:267120/1‑69 GATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTC < 1:267120/69‑1 GCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATAC > 1:859449/1‑143 TGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGG > 1:730606/1‑143 CAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTAGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACT > 1:202768/1‑143 GCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCAGTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAA < 1:606453/143‑1 TCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCCCTTTTTCTGCTGAAGAATACCCGGAACGGGCAAAGG > 2:377978/1‑143 GAAAACCTTGGTTTGGGAGAAGGATCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCCGCAGAATACCAGGAACTGACAAAGGCTTA > 2:746839/1‑143 TTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGGGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACA > 1:140287/1‑143 GTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAAT > 1:904533/1‑143 GGAGAAGGCTCTGCAGTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGAAACTGGCAAAGGCTTATCCGACAAATAAATT < 2:585318/143‑1 GAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGATTCCCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTG < 1:258694/143‑1 GAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCACAGGCTTATCCGACAACTAAATTG > 1:167276/1‑143 AGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCGGCCAACAGGCTGGCTGAAAGTCAATTGTGTTGTTTTAACTACAGAAGAATACCCGGAACTGGCAAATGCTTATCCGACAAATAAATTGCCTG < 2:661934/143‑1 GGCTCTGCATTACCTGTTGGTGTCTCTGTTCCTTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGc > 2:115575/1‑142 GGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGA > 1:821648/1‑143 GCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATCGCCgggt > 2:403214/1‑139 GTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAA‑‑GAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1207648‑1207805‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGAT < NC_000913/1209602‑1209461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |