Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 46 [0] [0] 46 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)45 (0.940) 40/266 0.2 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA  >  NC_000913/257766‑258043
                                                                                                                                             |                                                                                                                                        
tgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                         <  1:749453‑M1/143‑2 (MQ=255)
  ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAACATTTACCGCACTAGCCCCGTCTATTCGTGAGGGTAagt                                                                                                                                       >  1:328852‑M1/1‑140 (MQ=255)
      aaatgggctacatTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa                                                                                                                                   <  1:555178‑M1/137‑8 (MQ=255)
      aaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa                                                                                                                                   >  2:828451‑M1/1‑136 (MQ=255)
         ttggctaAATTTGGCCAAGTTGGTAGAACAGTTGCGTCACAACAGGAGATAGCAATGACGTTACCGAGTTGACGCGGGAAGAGTAGATTGATCAAAAAAGTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga                                                                                                                                <  2:884451‑M1/140‑11 (MQ=255)
          ttGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat                                                                                                                               <  1:354920‑M1/143‑12 (MQ=255)
              tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                           >  1:405332‑M1/1‑128 (MQ=255)
                      gCCAAGTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttt                                                                                                                   <  2:222986‑M1/143‑24 (MQ=255)
                        taatTTGGTAAAACAGGTGCATAACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                 <  2:784995‑M1/142‑26 (MQ=255)
                        cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGTCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                 <  2:517174‑M1/143‑26 (MQ=255)
                         aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgcaaagataatcgattctttttc                                                                                                                >  1:251149‑M1/1‑117 (MQ=255)
                         aaTTTGCTAATACAGGTTCATCACAACAGGATATAGCAATGACGTTACCGACTGTACACCCGAAGAGCAGATTGATCTAAAAATTTATCCCTCTAGGCCCTTATATTCGCGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                <  2:293389‑M1/143‑27 (MQ=255)
                                tAAAGCAGGAGCATCACAACAGGAGATAGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTAACGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                         <  1:1559‑M1/143‑34 (MQ=255)
                                tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGCGCAGATTGATCCAAAAATTTACCGCACTAGGCCCGTATATTCGTGACGTTAagtgcacagataatcgatttttattcgattata                                                                                                         >  2:187746‑M1/1‑110 (MQ=255)
                                   aaCAGTTCCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                      <  1:324064‑M1/143‑37 (MQ=255)
                                          gCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatg                                                                                               >  1:326987‑M1/1‑100 (MQ=255)
                                               acaacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtca                                                                                          <  1:828451‑M1/143‑49 (MQ=255)
                                                    aGGAGATAGCAATGACGTTACCGAGTGGACACACGAAGAGCAGATTTATCATAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtg                                                                                     >  1:39594‑M1/1‑90 (MQ=255)
                                                         aTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTAATCAAAAAATTTACAGCACTAGGCCAGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgactgtatgcgtcaacgtgaaacc                                                                                >  2:845267‑M1/1‑85 (MQ=255)
                                                           aGCAATGACGTTACCGAGTGTTTTCCTGAAGAGCCGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgg                                                                              <  1:341990‑M1/143‑61 (MQ=255)
                                                                   cGTTACCGAGTGGACACCCGAAGAGCAGCTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatcgtctggctgtatgcgtcaacgtgaaaccgtcaccggaa                                                                      >  2:435914‑M1/1‑75 (MQ=255)
                                                                   cGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                      <  1:116717‑M1/143‑69 (MQ=255)
                                                                     ttACCCAGTGGACACCCGCAGAGCAGAGTGATCAAAGAACGTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagattatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                    <  1:547370‑M1/143‑71 (MQ=255)
                                                                      tACCGAGTGGACACCCGAAGAGCAGAGTGATCAAAAAATTTACCGCACTAGGCCCGGATATTCGTGAAGGTAagtgcaaagataatcggatctttttagattggctggccgtatgggtgaacgtgaaaccaggacaggtagtg                                                                   >  2:872097‑M1/1‑72 (MQ=255)
                                                                       aCCGCGTGGACACCCGAAGAGCAGATTGCTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatattcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                  <  1:704977‑M1/143‑73 (MQ=255)
                                                                       aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGACGGTAagtgcaaagataaacgattctttttcgattgtctggctgtatgcggcgacgtgagaccggcaccggcagtgc                                                                  >  1:313370‑M1/1‑71 (MQ=255)
                                                                             tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaat                                                            >  1:601099‑M1/1‑65 (MQ=255)
                                                                                 cacCCGAACAGCAGATCGATGAAATAATATACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                        <  2:640408‑M1/143‑83 (MQ=255)
                                                                                  acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataagcgattctttttcgattgtctggctgtatgcggcaacgtggaaccggcaccggacgtgcgtgagttccgg                                                       >  2:663168‑M1/1‑60 (MQ=255)
                                                                                    ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCACGAATAATCGTGAAGGTAagtgcaaagataatcgattctatttcgattgtcaggctatatacgtcaacgtgaaaccggcaccggaaaagctagaattcctcac                                                     >  2:899389‑M1/1‑58 (MQ=255)
                                                                                     cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggc                                                    >  1:474190‑M1/1‑57 (MQ=255)
                                                                                            cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgcttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgga                                             >  2:789919‑M1/1‑50 (MQ=255)
                                                                                            cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtggtttttggggctggtgga                                             >  1:466844‑M1/1‑50 (MQ=255)
                                                                                               aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacaggaagtgcgtgaattctggggcagatggttgg                                          >  1:825255‑M1/1‑47 (MQ=255)
                                                                                                   aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                      <  1:705794‑M1/143‑101 (MQ=255)
                                                                                                    tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgggggatggagctg                                     >  1:839783‑M1/1‑42 (MQ=255)
                                                                                                       aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggag                                  >  1:668552‑M1/1‑39 (MQ=255)
                                                                                                       aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                  >  1:910761‑M1/1‑39 (MQ=255)
                                                                                                       aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                  >  1:736949‑M1/1‑39 (MQ=255)
                                                                                                       aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagcgggaa                                  >  1:408912‑M1/1‑39 (MQ=255)
                                                                                                             ttACCGCACTAGGCCCTTACATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcag                            <  1:96730‑M1/143‑111 (MQ=255)
                                                                                                                  gCACTCGGCGCGTATATTCGTGAAGGTAagtgcaaagataatcgtttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatc                       <  2:795848‑M1/143‑116 (MQ=255)
                                                                                                                       aGGCCCGTATATTCGTGAAAGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                  <  1:168497‑M1/143‑121 (MQ=255)
                                                                                                                          cccGTATATTCGTGAAGGCAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta               <  1:88754‑M1/143‑124 (MQ=255)
                                                                                                                                    cGTGAAGGTAtgtgtaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggacctggaagcgcaggaatcccgttttacctacagtta     <  2:119290‑M1/143‑134 (MQ=255)
                                                                                                                                       gAAGGTAagtgcaaagataatcgattctttttcgattatctggctgtctgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca  >  1:352652‑M1/1‑7 (MQ=255)
                                                                                                                                             |                                                                                                                                        
TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA  >  NC_000913/257766‑258043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.