Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 700,597 IS1 (–) +9 bp coding (990‑998/1221 nt) nagC ← N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)48 (0.950) 41/282 0.2 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 700597 = 0 (0.000)coding (998/1221 nt) nagC N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor
* ? NC_000913 = 7006050 (0.000)64 (1.260) 55/282 0.0 100% coding (990/1221 nt) nagC N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor
?NC_000913 = 1050545 NA (NA)noncoding (768/768 nt) IS1 repeat region

Only 100 of 115 total aligned reads displayed.

GCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGC  >  NC_000913/700463‑700746
                                                                                                                                              |                                                                                                                                             
tgccggcggtggttttgccgttaggcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTg                                                                                                                                               <  2:266896‑M2/9‑1 (MQ=255)
gtccggcggggcttttgcggttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTg                                                                                                                                               <  1:405075‑M2/9‑1 (MQ=255)
  tCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTCTTACTGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCCGTGATTTCACCGGCAATAACAATGTATTGCGGAGTAAATAAGTTGgg                                                                                                                                             >  2:16195‑M1/1‑141 (MQ=255)
  cggtcggtgttttgtccgagacgcaacacctcgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaagcagtaagttggcagcatcaccAATAAGTTGAt                                                                                                                                             <  2:65491‑M2/11‑1 (MQ=255)
   cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATa                                                                                                                                            <  2:78441‑M2/12‑1 (MQ=255)
   cggcggtgccgctgccgttacccaccaacccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaacttggcagcctcaccAATAAGTTGATa                                                                                                                                            <  2:717743‑M2/12‑1 (MQ=255)
   cAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACGGGCAATGACAATTTTTTGCGGATTAAATAAGTTGggt                                                                                                                                            >  1:344000‑M1/1‑140 (MQ=255)
         tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATg                                                                                                                                      >  1:230227‑M2/126‑143 (MQ=255)
          gcttgtggcgttacgcaccacgcagtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATgg                                                                                                                                     <  1:121258‑M2/19‑1 (MQ=255)
            ccaccGGCAGATGAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactcc                                                                                                                                   <  1:314771‑M1/143‑13 (MQ=255)
              ttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCgag                                                                                                                                 >  2:592049‑M2/121‑142 (MQ=255)
               ccGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTGTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTACATAAGTCGggtaatgcctccaac                                                                                                                                >  2:370700‑M1/1‑128 (MQ=255)
                cGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaact                                                                                                                               >  1:489547‑M1/1‑127 (MQ=255)
                cGGCAGATTAGTGCGAAACGCAGTCAGCGGCTGGGTATTAATGCAGCGTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaact                                                                                                                               <  1:463865‑M1/143‑17 (MQ=255)
                  gCAGAGCAGTGCGAAACGCCTTCAGCGCCGGGGTATTAATGCAGCGTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaactta                                                                                                                             <  1:703632‑M1/143‑19 (MQ=255)
                   cAGAGTAGTGCGAAACGCCGTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttat                                                                                                                            <  1:744523‑M1/143‑20 (MQ=255)
                    ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGtttt                                                                                                                           <  2:671723‑M2/29‑1 (MQ=255)
                    ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttgacagcatcaccAATAAGTTGAGACCaacggcgaacgttcc                                                                                                                           >  2:710089‑M2/115‑136 (MQ=255)
                    aGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttatt                                                                                                                           <  1:544292‑M1/143‑21 (MQ=255)
                     tacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTa                                                                                                                          <  2:920609‑M2/30‑1 (MQ=255)
                     gATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGCGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAACAACAATGTTTTGCAGATTCACTAAGTTGggtaatgactccaccctatcg                                                                                                                          >  2:282581‑M1/1‑122 (MQ=255)
                       ttAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgat                                                                                                                        <  2:919042‑M1/143‑24 (MQ=255)
                        gagTGCGAAGCGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATACGTTGggtaatgactccaacttattgata                                                                                                                       <  2:818324‑M1/142‑25 (MQ=255)
                          accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcaccacaaaaacaccatcatacactaaatcagtaagctggcagcacccccACACAGTTGATAGCAATGGCGATGGGTTTACCCAg                                                                                                                     >  2:430790‑M2/109‑143 (MQ=255)
                             cGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgtt                                                                                                                  <  1:552723‑M1/143‑30 (MQ=255)
                             accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATg                                                                                                                  >  2:652867‑M2/106‑143 (MQ=255)
                               cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATgac                                                                                                                <  1:362086‑M2/40‑1 (MQ=255)
                                  cGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCAGTGATTTCACCAGCAATAACAATTTTTTGCGGATTAAATAAGGTGggtaatgactccaacttattgatagtgttttatg                                                                                                             >  1:618824‑M1/1‑109 (MQ=255)
                                  cGCCTTCAGCGCCTGGGTATTAATGCACCTTTCCATAGCAGCGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatg                                                                                                             <  1:551814‑M1/143‑35 (MQ=255)
                                   gCCTTCAGCGCCTGGGTATTCATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgt                                                                                                            <  1:624581‑M1/143‑36 (MQ=255)
                                    ccTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATGACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgctgtatgtt                                                                                                           >  1:189777‑M1/1‑107 (MQ=255)
                                     cctcaGCGCATGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACGGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgcctccaacttattgatagtgtgttatgttc                                                                                                          <  1:368547‑M1/141‑38 (MQ=255)
                                     cTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttc                                                                                                          <  1:896514‑M1/143‑38 (MQ=255)
                                         aGCGCCTGGTTATTAATGCAGCGTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactacaagttattgatagtgttttatgttcagat                                                                                                      <  2:115494‑M1/143‑42 (MQ=255)
                                           cgcCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataa                                                                                                    >  2:921139‑M1/1‑100 (MQ=255)
                                           cgcCTGAGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataa                                                                                                    <  2:679530‑M1/143‑44 (MQ=255)
                                              acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGGTAGCAATGGCGATGGTTTTACCCAGATGACGACCGGCATACTCaa                                                                                                 >  1:596237‑M2/89‑143 (MQ=255)
                                               tGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                                >  1:662716‑M1/1‑96 (MQ=255)
                                                 ggTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTGTTTGCGGATTAAATAAGTTGggtaatgaccccgacttattgggagtgttttatgttccgataatgcccg                                                                                              >  1:419689‑M1/1‑94 (MQ=255)
                                                   tATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGAGAATTCACCGGCAATAAAAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaactcattgatagtgttttatgttcagcgaattcccgat                                                                                            >  1:658924‑M1/1‑92 (MQ=255)
                                                    ggaacagctgatagaaacagaagtcactggagcaactcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACtt                                                                                           <  2:741791‑M2/61‑1 (MQ=255)
                                                      tAATGCAGCTTTCAATAGCAGTGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAATAATTTTTTGCGGATTAAATAAGTTGggtaatggctcagacttattgatagtgttttatgttcagataatgcccgatgac                                                                                         <  1:456738‑M1/143‑55 (MQ=255)
                                                      gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagatggcagcatcaccAATAAGTTGATAGCAATGGCGATGGATTTACCCAGATGACGACCGACATACTAAAGTAATTcc                                                                                         >  2:216848‑M2/81‑143 (MQ=255)
                                                      gacagctcatagaaaccgaagccactggtgcacctcaaaaacaccctccttcacgtcatcggtacgttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTcc                                                                                         <  2:906639‑M2/63‑1 (MQ=255)
                                                       acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGATTTAAACAGATGACGACCGACATACTAAATTACttcgg                                                                                        >  1:371384‑M2/80‑141 (MQ=255)
                                                       aaTGCAGCTTTCAATAGCAGGGAGCAGCACTGTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact                                                                                        <  1:29691‑M1/143‑56 (MQ=255)
                                                           cAGCTTTTGGTAGCAGGGCGCAGCAATTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgacgccaacttattgatagtgttttatgttcagataatgcccgatgactttgt                                                                                    <  2:746340‑M1/143‑60 (MQ=255)
                                                            tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCACTGGCGATGGGTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGcc                                                                                   >  1:211513‑M2/75‑143 (MQ=255)
                                                             gatagaaacagaagccactggagcacctcaaaaacaccagcatacactaaatcagtaagttggcggcatcaccAATAAGTTGATCGCAATGGCGATGGTGTTACCCAGATGACGACCGACCTACTCAGTTACTTCCGACGACa                                                                                  >  1:292181‑M2/74‑143 (MQ=255)
                                                               tttCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                                <  2:489547‑M1/143‑64 (MQ=255)
                                                               tttCAATAGCAGGGAGCAGAACTTGATCGGCTTCGGTGATTTCATCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                                <  2:364560‑M1/143‑64 (MQ=255)
                                                                agaaacagaagccactggagcacctcaacaacaccagcatacgctaagtttgtgagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACACAGATGACGACCGACGTACTCAATTACTTCCGACGCcagca                                                                               >  1:258532‑M2/71‑141 (MQ=255)
                                                                 tCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttacgttcagataatgcccgatgactttgtcatgca                                                                              >  2:625838‑M1/1‑78 (MQ=255)
                                                                  aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATACGTTGATAGAAATAGAGATGGATATACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTa                                                                             >  1:834531‑M2/69‑143 (MQ=255)
                                                                  aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATCCTCAATTACTTCGGCCGCCCGActc                                                                             >  1:191237‑M2/69‑142 (MQ=255)
                                                                   aaTAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc                                                                            >  1:75730‑M1/1‑76 (MQ=255)
                                                                    ccagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATc                                                                           <  2:310691‑M2/77‑1 (MQ=255)
                                                                     tAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctc                                                                          >  1:797137‑M1/1‑74 (MQ=255)
                                                                     cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCg                                                                          >  1:811897‑M2/66‑143 (MQ=255)
                                                                         aGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgattactttgtcatgcaggtccacc                                                                      <  2:212649‑M1/143‑74 (MQ=255)
                                                                          gggAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccggtgactttgtcctgcagctcctccg                                                                     >  1:558035‑M1/1‑69 (MQ=255)
                                                                          gccactggagcgcttcaaaaacaccatcatacactacatcagtaagttggcagcatcactAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCttt                                                                     <  2:717998‑M2/83‑1 (MQ=255)
                                                                          gccactcgagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCttt                                                                     <  1:859328‑M2/83‑1 (MQ=255)
                                                                            cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGt                                                                   >  1:906691‑M2/59‑143 (MQ=255)
                                                                               tggtgcacctcaaaaactccatcatacactaaagcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTcg                                                                <  1:204298‑M2/88‑1 (MQ=255)
                                                                               tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCATCTGTTcg                                                                >  2:466333‑M2/56‑143 (MQ=255)
                                                                               cagcaCTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                                <  2:19657‑M1/143‑80 (MQ=255)
                                                                                 gcaCTTTATCGGTTTAGGTGATTTCACCGGCAATAACAATTTTTTGCTGATTAAATAAGTTGtgtaatgactccaacttatttatagtgttttatgttcatataatgcccgatgactttgtcatgcagctccaccgattttga                                                              <  2:519659‑M1/143‑82 (MQ=255)
                                                                                 gagcacctcaaaaacaccatcatacactcaaacagtcagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTcgcg                                                              >  1:481098‑M2/54‑143 (MQ=255)
                                                                                  caCTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcgaacgatctgcgg                                                             >  2:799155‑M1/1‑61 (MQ=255)
                                                                                   aCTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgaga                                                            >  1:786400‑M1/1‑60 (MQ=255)
                                                                                    ctctatcTGATTCCGTCACTTCACCCCCAATCACAATTTTGTGCAGATTAAATAAGTTGagtaatgactccaacttatttatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcccccgattttgagaa                                                           <  2:481725‑M1/140‑85 (MQ=255)
                                                                                     tttggcggtttCGGTAATTTCACCGGCAACAACATTTCTTTGCGTATTAAATAAGTTGggtaatgattccaacttattgatagtgttttatgttcagataattcccgatgactttgtcatgtagctctaccgattttgagaac                                                          <  2:63382‑M1/138‑86 (MQ=255)
                                                                                     tttATCGGCTTTGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactctaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgcgcac                                                          >  2:453706‑M1/1‑58 (MQ=255)
                                                                                     tttATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcaggtgatgcgcgaggactttgtcatgcagctacagcgattttgggaac                                                          >  1:387923‑M1/1‑58 (MQ=255)
                                                                                     tttATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac                                                          >  1:735453‑M1/1‑58 (MQ=255)
                                                                                       ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCACTTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTg                                                        >  2:376780‑M2/48‑143 (MQ=255)
                                                                                       ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTg                                                        <  1:894095‑M2/96‑1 (MQ=255)
                                                                                           tgcTTCGGTGATTTCACCTGCAATAACAATTGTTTGCGGATTAAATAAGTTGggtaatgactccaactgattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagc                                                    <  1:2068‑M1/142‑92 (MQ=255)
                                                                                            aaacaccctcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTCCGCGGCTTTGCAGAt                                                   <  2:789371‑M2/101‑1 (MQ=255)
                                                                                               tCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttggcctgcagctccaccgatttgggggacgaccgcgacg                                                >  1:775023‑M1/1‑48 (MQ=255)
                                                                                                 ccatcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATGGCGGTGGCGAACATTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGttt                                              <  1:679766‑M2/106‑1 (MQ=255)
                                                                                                  catcatacactaaatcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGACagttgt                                             >  1:36852‑M2/37‑141 (MQ=255)
                                                                                                            taaatcactaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAg                                   <  1:161436‑M2/117‑1 (MQ=255)
                                                                                                               cAATAACAATTTTGTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgctcagataatgcccgatgactttgtcatgcagctccaccgactctgagatcgacagcgacttccgtcccagccgtgc                                <  2:238462‑M1/143‑112 (MQ=255)
                                                                                                               atcagtaagttggcagcatcaccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAgtcg                                >  1:841765‑M2/24‑143 (MQ=255)
                                                                                                                    taagttggcagcatcaccAATAAGTTGATAGCGATGGCGATGGTTTTACCCTGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAg                           >  2:488378‑M2/19‑143 (MQ=255)
                                                                                                                    aCAATGTGTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggt                           >  2:713289‑M1/1‑27 (MQ=255)
                                                                                                                     cAATTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                          >  2:84925‑M1/1‑26 (MQ=255)
                                                                                                                       aTTTTTTGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagtacgacagcgacttccgtcccagccgtgccaggtgct                        <  1:604820‑M1/143‑120 (MQ=255)
                                                                                                                        tttgatgcggaTTAACTAAGTTGggtaacgactccaacttattgatagtgtattatgttcagataatgcccgatgactttgtcatgcagttccaccgtgtttgagaacgacagcgacctccgtcccagccgtgccaggtgctg                       <  1:366268‑M1/138‑121 (MQ=255)
                                                                                                                            ttGCGGATTAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                   <  2:797137‑M1/143‑125 (MQ=255)
                                                                                                                                    tAAATAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag           <  1:868043‑M1/143‑133 (MQ=255)
                                                                                                                                    ccAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTgg           <  1:412914‑M2/141‑1 (MQ=255)
                                                                                                                                      aaTAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCTGCTCTCGTa         >  1:325123/1‑143 (MQ=255)
                                                                                                                                        tAAGTTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgcggcctcagactcaggtta       >  2:730295‑M1/1‑7 (MQ=255)
                                                                                                                                        tAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCGAGTAGc       >  1:280707/1‑143 (MQ=255)
                                                                                                                                          aGTTGTTAGCAATGGCGATGGTTTTTCCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCGTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGccc     <  2:125601/143‑1 (MQ=255)
                                                                                                                                           gTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGGCATACTCAATTACTTCCGACGCCAGACTATCGCCCTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCGGCGGCACGCGGCTCTGGAGcccct   >  2:898461/1‑141 (MQ=255)
                                                                                                                                             cgggtaatgactccaacttattgatagtgctttatgttcagataatgcccgatgactttgtcatgcacctccaccgatttggagaacgacagcgacttccgtcccagccgtaccaggtgctgccgcagactcgggttattccg  >  2:584578‑M1/2‑2 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCAGGGAGCAGCACTTTATCGGCTTCGGTGATTTCACCGGCAATAACAATTTTTTGCGGATTAAATAAGTTGATAGCAATGGCGATGGTTTTACCCAGATGACGACCGACATACTCAATTACTTCCGACGCCAGACTATCGCCTTTGTTCGCGGCTTTGCAGATAGTTTTGATGGTGCAGTCGTCCAGCGGCACGCGGCTCTGGTAGCCCTGC  >  NC_000913/700463‑700746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.