New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2654970 =	NA (NA)	4 (0.100) +GATTTTGCGTTTGTCATCAGACTT	4/234	6.3	NA	noncoding (1/97 nt)	RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 4470516	NA (NA)					intergenic (+195/+11)	mgtA/ridA	magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification
Rejected: Coverage evenness skew score above cutoff.

CCAGACGGTGGATTCCAGTAGAGTACGGAAAAAGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGTTTACGCCGTTAACAGATTAGCTATCGTGCGCACA  >  NC_000913/2654829‑2655108                                                                                                                                              |                                                                                                                                           ccAGACGGTGGATTCCAGTAGAGTACGGAAAAAGGCCGGGCGGTGCGCCGGTTCAGCTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGc                                                                                                                                           >  1:267118/1‑143 (MQ=255)   aGACGGTGGATTCCGGTAGAGTACGGAAAAAGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCt                                                                                                                                         <  2:483915/143‑1 (MQ=255)         tGGATTCCAGTAGAGTACGGAAAAAGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCCCAAATGCCTGATgcg                                                                                                                                   >  2:880150/1‑143 (MQ=255)                cAGTAGAGTACGGAAAAAGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTGCCAGCAGGTCGTCAAGTGCGTGTTTTGGTTCGGACATAATAACGAGAAGTCATTCAACGTGCGGGGGGCAAGTGCCTGATGCACTaggat                                                                                                                            >  2:181308/1‑139 (MQ=255)                    atggTACGGAAAAAGTCCGGGCGGTGCGCCGGTCCCGTCGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATc                                                                                                                        <  2:366809/140‑1 (MQ=255)                       gTACGGAAAAAGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAgg                                                                                                                     <  2:370442/143‑1 (MQ=255)                        tACGGAAAAAGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGCACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGc                                                                                                                    >  2:246405/1‑143 (MQ=255)                          cGGAAAAAGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGGTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGCTGCGCTACGCTTATCAGGCCt                                                                                                                  >  1:503146/1‑143 (MQ=255)                           ggAAAAAGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAGTTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCAACGATAATCAGGCCTa                                                                                                                 >  1:359261/1‑143 (MQ=255)                           ggAAAAAGGCCGGGCGATGCGCCGGCTCAGTTGCTGCTTTTTCCAGCAGGTCTTCCAGTTCGTCTTTTGTTTCGCACCTCAGAACCACACTTCATTCAACGCTCCGGGCGCACATGCCTGATCCGCTACGCTTATCAGcccac                                                                                                                 >  2:110020/1‑141 (MQ=255)                                aaGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAgg                                                                                                            <  1:669083/143‑1 (MQ=255)                                aaGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCCTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAgg                                                                                                            >  2:700724/1‑143 (MQ=255)                                      gggcggggcgCCGGTTAAGTGTGGGGTTGTGCGAGCGGGTCTTGGTGTTCGTTTTTGGTTGCGGATATGAGCACTACAATTCACTCAACGTTCGGGGCGCAGATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCg                                                                                                      <  2:704582/143‑1 (MQ=16)                                            tGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCCTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAAttt                                                                                                <  1:700724/143‑1 (MQ=255)                                               gcCGGTTCAGCTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATttgtt                                                                                             <  2:267118/143‑1 (MQ=255)                                                        gTTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCa                                                                                    >  1:582145/1‑143 (MQ=255)                                                             tgctTTTTCCAGCAGGTCTTCACGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCCACGTTCGGGGCGCACCTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTAGTTGAATTGGCGGGAtt                                                                               >  1:56173/1‑143 (MQ=38)                                                              gctTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAAttt                                                                              >  1:355177/1‑143 (MQ=255)                                                              gctTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTACCAGGCCTACAAGGGATTCGCCATTTGTTGCATTTGCCGGAttt                                                                              >  2:447481/1‑143 (MQ=255)                                                                  tttCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAg                                                                          <  1:300219/143‑1 (MQ=255)                                                                      cagcagGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGCACCACACTTCATTCAACGTTCGCGGCGCAAGTACCTAAAGCGCTACGCTTATCCGGCCTACCAGGGCATCGCCAATTGTTGAATTTGCAGAAGTTCTAGGCCg                                                                      >  2:372429/1‑143 (MQ=255)                                                                       agcagGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGACTCAGTAGGCCgg                                                                     >  2:546689/1‑143 (MQ=255)                                                                                  aaGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCAGTCAACTTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACCAGCGATTCTCAATTTGTTGGATTTGCAGCATTCGCAGGTCGGTTGAGGCGttt                                                          >  2:374874/1‑143 (MQ=37)                                                                                      tCGTTTCTTGTTTCGGCCCTACGAACCACCCTTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTAcgc                                                      <  1:134819/143‑1 (MQ=25)                                                                                       cGTTGTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTAcgcc                                                     <  1:822985/143‑1 (MQ=255)                                                                                       cGTTGTTTGTTTCGCGCATAACAACCACAATCCGTTCAACGGTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCATGCCTACAAGGGATTCGCAGTGTGTTGAACTTGCAGAATTTGTAGGCCGGATAAGGCGTTTAcgcc                                                     <  2:432903/143‑1 (MQ=21)                                                                                         ttttttGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGGTAAGGCGTTTAcgccgc                                                   >  1:488372/1‑143 (MQ=255)                                                                                         tttgttGGTTCAGACATAAGAACCACAATTTACTCAACGTTCGGGGCGCAAATGCCTGATGCGATACGCGTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTAcgccgc                                                   <  1:497028/143‑1 (MQ=25)                                                                                            tttGTTTCGGACATAAGAACCACAATTAATTCAACCATCAGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGAGAAGGCGTTTACGCCGCagc                                                >  1:39617/1‑141 (MQ=25)                                                                                                 ttCGGACATAAGCACCACAAGTCATTCAACGTTCGGGGCGCCAAGGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                           <  2:906248/143‑1 (MQ=255)                                                                                                     gACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACCAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCGTAtt                                       >  2:1718/1‑143 (MQ=255)                                                                                                        aTAAGAACCACAATTAATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGt                                    <  1:887219/143‑1 (MQ=255)                                                                                                        aTAAGAACCACAATGCACGCAGCGTGCCGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGt                                    <  2:231209/143‑1 (MQ=21)                                                                                                        aTAAGAACCACAATCCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGt                                    <  1:594042/143‑1 (MQ=255)                                                                                                          aaGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGttt                                  >  1:598407/1‑143 (MQ=255)                                                                                                               ccACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGTTTACGcc                             <  2:355177/143‑1 (MQ=255)                                                                                                                cacaATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCACTCTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCTTAGTTTACGCCg                            >  1:255845/1‑143 (MQ=255)                                                                                                                cacaATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGGTTACTCCGCATCCGGCATATTAGTTTACGCCg                            >  1:120904/1‑143 (MQ=255)                                                                                                                  caAGTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGTTTACGCCGtt                          <  1:843056/143‑1 (MQ=255)                                                                                                                         ttcaACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGTTTACGCCGTTAACAGAt                   <  1:763921/143‑1 (MQ=255)                                                                                                                         ctcgaCGTTCTGGGCGCAAATGCCTGATGCGCTACGCTTAGCAGGCCTACAAGGGATTCGTGCTTTGTTGTTTCCCCAGAATTTGTAGTGTGGATAAGGCGTTTACGCCGCATCCGGCATATTAGTTTACGCCGTTAACAGAt                   <  2:111863/139‑1 (MQ=25)                                                                                                                                 tCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTAGTTGAATTTGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGGTTACGCCGTTAACAGGTTAGATATc           >  1:291142/1‑143 (MQ=21)                                                                                                                                     ggCGCAAGTGCGTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGTTTACGCCGTTAACAGATTAGCTATCGTgc       <  1:336041/143‑1 (MQ=255)                                                                                                                                          aaaTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGTTTACGCCGTTACCGGATTAGCTATCGCGCGcaca  >  2:916590/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                           CCAGACGGTGGATTCCAGTAGAGTACGGAAAAAGGCCGGGCGGTGCGCCGGTTCAGTTGCTGCTTTTTCCAGCAGGTCTTCAAGTTCGTTTTTTGTTTCGGACATAAGAACCACAATTCATTCAACGTTCGGGGCGCAAATGCCTGATGCGCTACGCTTATCAGGCCTACAAGGGATTCGCAATTTGTTGAATTTGCAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATATTAGTTTACGCCGTTAACAGATTAGCTATCGTGCGCACA  >  NC_000913/2654829‑2655108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.