| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3598397 = | NA (NA) | 4 (0.100) +GATTTTGCGTTTGTCATCAGACTT |
4/234 | 6.3 | NA | noncoding (1/99 nt) | RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470516 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TGCTGGTGGATGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAA > NC_000913/3598263‑3598539 | tGCTGGTGGATGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATgc < 2:551259/143‑1 (MQ=255) ggtggtggATGCAGGCGTGGAAGCGCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCt < 2:327558/141‑1 (MQ=255) aTGGCGGGTGTAGGCGTGGGTGATCGCGGTGTGATGACGGGGGTTATGCAGGCGCTGTGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCtt < 2:79956/143‑1 (MQ=255) tGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAACAGTGATATTGCCTGATGCGCTACGCTTa > 2:308537/1‑143 (MQ=255) ggCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTACGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATg < 1:19464/131‑1 (MQ=255) ggCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTACGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATg > 2:19464/1‑131 (MQ=255) gCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATc > 1:230584/1‑143 (MQ=255) cGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCGGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCa > 1:24297/1‑143 (MQ=255) gtGCAGGCGTGGGAGATCGCGGTGTGATGACGGCGGTTGTGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGc < 2:494189/142‑1 (MQ=255) tGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGcc < 2:452960/143‑1 (MQ=255) gCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCt < 1:199426/143‑1 (MQ=255) aGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAGAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTAc > 1:409103/1‑143 (MQ=255) gCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACaa > 1:803197/1‑143 (MQ=255) tGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCATCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCAACGCTTATCCGGCCCACACtgt > 2:919134/1‑143 (MQ=255) cggaggtCGGGGTGGGATGACGGCGTTTATGGAGGAGCTGGGGTTTACGGCGCAACAGGGCGGCTGGGAGAGGTGTTAATCGTCAAGTTTGATTTCAAAAGTGGTATGGCCTGATGCGCTACGCTTATCAGGCCTACAAtgtg < 2:892260/137‑1 (MQ=255) ggtCGCGGTGGGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGtt < 1:566688/141‑1 (MQ=255) aTCGCGGTGTGAGGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAAACGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTg < 2:263204/143‑1 (MQ=255) tCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGc > 1:500850/1‑143 (MQ=255) tCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGc > 1:318498/1‑143 (MQ=255) tgatgaCGGCGTTTATGCAGGCGCTGGTGTTTACGGCACAACAGGGCGGCTGGGCGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACt > 1:484652/1‑143 (MQ=255) tgatgaCGGCGTTTATGCAGGCGCTGGTGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACt > 1:308762/1‑143 (MQ=255) cGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTc > 1:730360/1‑143 (MQ=255) ggCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCACGCCTACAATGTGTGTTGCAACCTACTGACTTCt > 1:7413/1‑143 (MQ=255) gCGTTTCTGCGGGCGCTGGGGGTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCtt < 1:845060/143‑1 (MQ=255) cgggtATTCAGGAGCTGGGGTTTACGGCACGACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCttt < 2:833538/139‑1 (MQ=255) gtgcggCAGGCGCTGGGGTTTTCGGCCCAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGACTTCAATAGTGATATTGCTTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTgg < 2:540506/138‑1 (MQ=255) gCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGTTCTTGCCTGATGCGCGACGGTTATCAATCGTACTAGGTGTTGTGCAATTTACTGATTTCTTTGGATCtt < 1:394380/143‑1 (MQ=255) cAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGTAATTTACTGATTTCTTTGGATATTg > 2:120119/1‑143 (MQ=255) aGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGCTTTCAAAAGAGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGt > 1:415857/1‑143 (MQ=255) gcgcTGGGGTTTACGGCACAACGGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAg < 1:274043/143‑1 (MQ=255) tGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCg > 2:32970/1‑143 (MQ=255) ggggTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCgg > 1:67133/1‑143 (MQ=255) tttACGGCTCAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATaa < 2:789159/143‑1 (MQ=255) gcGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTGGATTTCAACAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTCTTGCAATTTACAGATTTCTTTGGATCTTGTAGGCCGGATAAGGc < 1:839673/142‑1 (MQ=255) cacaACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGttt > 1:472018/1‑143 (MQ=255) cacaACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGttt > 1:491958/1‑143 (MQ=255) aacaGGGCGGCTGGGCGAAGTGTTAATCGTCAAGTTTGATGTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcg < 2:758695/143‑1 (MQ=255) tGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc > 1:197700/1‑143 (MQ=255) tGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc < 2:264229/143‑1 (MQ=255) gagaAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATg > 2:454238/1‑143 (MQ=255) agaAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGTAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGa > 1:471718/1‑143 (MQ=255) aaGTGCTGATGGTCACGTTTGATGTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAg < 2:160252/143‑1 (MQ=37) tgtTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCaa > 2:364115/1‑143 (MQ=255) gTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCg > 1:719276/1‑143 (MQ=255) caagggtGATCTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGat < 1:549920/137‑1 (MQ=255) gtggATTGCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTa < 1:733647/140‑1 (MQ=255) tttCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAAt > 2:696758/1‑143 (MQ=255) tCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAAttt > 1:40079/1‑143 (MQ=255) aaaGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTggc > 1:13533/1‑143 (MQ=255) gATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCCATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCaa < 1:92891/143‑1 (MQ=255) ggatggCCTGATGGGCTACGCGTATCAGTCCTACACTGTGTAGCGCAAGTTGCTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAAc < 1:425250/138‑1 (MQ=37) gCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCaaa < 2:318498/143‑1 (MQ=255) | TGCTGGTGGATGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAA > NC_000913/3598263‑3598539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |