| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3423665 = | NA (NA) | 14 (0.280) | 11/278 | 4.2 | 19.4% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171803 | 59 (1.160) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACT > NC_000913/4171661‑4171915 | tCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTAt < 2:844172/143‑1 (MQ=35) ccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGGCTTTCGAGTTATCt > 1:57085/1‑143 (MQ=255) cACCTGACCCCATGCCGAAGCCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtg < 2:549963/143‑1 (MQ=25) gcTGGCCCCAGGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgtt < 2:430111/142‑1 (MQ=21) ccggACCCCAGGCCGAACTCAGAAGGGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgtt < 2:906419/140‑1 (MQ=255) ccTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgtt < 2:918336/143‑1 (MQ=35) gccccAGGCTGAACTCAGAAGTGAAGCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACGGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt < 2:384908/142‑1 (MQ=255) ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTc > 1:142402/1‑143 (MQ=34) caggCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg < 1:642138/140‑1 (MQ=25) cGAACTCAGCAGTGAAACGCAGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGTCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGaa < 1:314929/143‑1 (MQ=255) cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGaa > 1:743049/1‑143 (MQ=35) cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGATTGTCGGAGaa > 1:454171/1‑143 (MQ=21) cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGCGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAACACGAAAGGCTCAGTCGAACGACTGGGCCTTTCGATTTATCAGTTGTTTGACGGTGaa > 2:762359/1‑143 (MQ=11) cAGAAGTGAAACGCCGTCGCGCCGATGGTAGCGTGGAGTCTACCCATGGCGCG‑GTAGGGAACTGCCAGGCACCAAATAAACCGACTGGCTCAGTCGAACGACTGGGCCTTTCGTTCTATCTGTTGTTTGTCGGTGAACGctct < 1:474577/143‑1 (MQ=11) tGAACCGCCGGAGCGCCGATGGTAGTGTCGGGTCTCCCCAT‑GCGAGAGTAGGGAACTCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAg < 2:232889/143‑1 (MQ=255) tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAg > 1:768015/1‑143 (MQ=35) aaccGCCGTAGCGCCGAGGGTAGCGGGGGTTCGCCCAAT‑GCGAGGGTATGTCGCTGCCAGGCATCAAATAACACGAAATGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTa < 2:553197/140‑1 (MQ=11) aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTa > 1:691894/1‑143 (MQ=35) accGCCGTAGGGCCGGTGGTAGGGTCGGTGCGCACCAG‑GTGAGAGTAGGGAACTGGCAGGCATCAAATAAAACGGAAGGCTCAGCCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAg < 2:621256/141‑1 (MQ=11) aCGCCGTAGCGCCGATGGTAGTGTGGCGTCTCCCCAT‑GCGAGAGTAGGGCACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAgg < 1:589220/143‑1 (MQ=21) ggcggtcgcgcCGATGGTAGGGTCGAGTGTGTCCAT‑GCGAGAGTAGGGACCTGCCAGGTATCGAATCCTCCGGAAGGCGGAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGa < 2:505890/136‑1 (MQ=2) cGCCGTAGCGCCCATGGTAGTGTGGCGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGa < 1:433515/143‑1 (MQ=21) tAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACaact > 2:470722/1‑141 (MQ=25) gcCGCTGGTAGTGTGGGGACTCCGCAT‑GCGAGAGTAGGGAACTGCAAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGACCGACCGGTTTATCTGTTGTGTGTCGGTGAAAGCTCCCCTGAGTAAGACAAATcggg > 2:574768/1‑140 (MQ=11) gcCGATGGTAGTGTGGGGTCGCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgc < 1:913305/143‑1 (MQ=21) ccGATGGTAGGGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgcc < 1:817648/143‑1 (MQ=25) cGATGGTAGTGCGGGGTCTACCCAT‑GCGAGAGTAGGGACCTGAAAGCAGACGAATACAACGAAAGCCTCAGCCGAAAGACTGGGCCTTTCGTTTTATCTTTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgccg < 1:173769/143‑1 (MQ=11) cGATCGTAGTGTGGGGGCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgccg < 1:651693/143‑1 (MQ=25) gggTAGTGTGAGGTCTCTGCAG‑GCGAGAGTAGGGAACTGCCAGGCATCAACTAGTACGTAGGGCTCAGTCGAGAGAGTGGGCCGTTCGTTTTATCTGTGGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGa < 2:97234/142‑1 (MQ=11) tgtgGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCgggtgtgggt > 1:918384/1‑136 (MQ=255) gtgGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAtt < 1:104760/143‑1 (MQ=35) ggTCTCCCCAG‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGaa < 2:732126/143‑1 (MQ=25) ccccAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGACAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGTGAGCGGAGTTGAACGTTg > 1:346586/1‑143 (MQ=255) ccAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGACGGCAGCGGATTTGCACGTTGCg > 2:632022/1‑143 (MQ=12) aT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTGGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGaa < 2:212446/143‑1 (MQ=17) agagTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCCCTCCTGCGTAGCACACATCCGCCGGGAGCGGCATTGAACGCTGCGCAGCAAc > 2:220037/1‑143 (MQ=11) agTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGGCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACgg < 1:858692/143‑1 (MQ=17) gggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGACCGCTCTCCTGAGTAGGACAAATCCGCCGGCAGCGGCTTTGACCGTTGCGACGCAACGGCACg > 1:612717/1‑143 (MQ=11) gAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGa > 1:807347/1‑143 (MQ=32) cTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGCAGCAACGGCCCGGCggg > 2:585387/1‑143 (MQ=17) tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGt > 1:645217/1‑143 (MQ=32) tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGt > 1:703904/1‑143 (MQ=32) gCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAggggg > 1:165199/1‑141 (MQ=17) cAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGc > 2:844703/1‑143 (MQ=32) agctgtCAAATAAACCGACAGGGTAATGCGAAAGACCGGGCCTTTCGTTTTACCTGTGGCTTGTCGGTGAACGCTCTACTGAGTAGGACAAAGCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCg < 2:345863/138‑1 (MQ=11) aGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTGTCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCg > 1:78763/1‑143 (MQ=17) tCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAg < 1:709089/143‑1 (MQ=32) cacaTAAAACGAACGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTGTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAgg < 2:268371/140‑1 (MQ=12) cAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTTGGACAAATCCGCCGGGAGCTGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAgg < 1:463550/143‑1 (MQ=17) aaTAAATCGAAAGGCGCAGTCGACAGACTGGGCCTTTCGGTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAAACCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAc < 2:339491/143‑1 (MQ=11) tAAAACGAAAGGCTCAGGCGAAAGACTGGGCCTTTAGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGATGCGAGGCAACGGCCCGGAGGGTGGcaggcaggcagc > 2:127231/1‑139 (MQ=11) aaaaCGAAAGGCTCAGCCGAAAGACTAGGCCGATCGGTTTATCTGCTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAAGCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgcc < 1:41189/143‑1 (MQ=11) cGAAAGGCTCAGTCGAAACACTGTGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTATGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgcccgcc < 1:788142/143‑1 (MQ=12) gAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGCGGGGGGCGGGCAGGAcgcccgccc > 1:708134/1‑142 (MQ=17) gAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGACCGCCa > 1:846069/1‑143 (MQ=17) aGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGCACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGCAAGGTGGCAGGCAACACGCCCGACACaa > 2:688290/1‑143 (MQ=11) aGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATaa > 1:152233/1‑143 (MQ=32) gCTCAGTCGAAAGACTGGGCCTTTCGTGTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAAc < 1:230962/143‑1 (MQ=17) gCTCAGTCGAAAGACTGGGCCTTGCGTTTTACCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAAc < 1:226060/143‑1 (MQ=17) cTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGTAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACt > 1:795555/1‑143 (MQ=17) | TCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT‑GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACT > NC_000913/4171661‑4171915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |