New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3774236 =NA (NA)4 (0.100)
+GATTTTGCGTTTGTCATCAGACTT
4/234 6.3 NA noncoding (1/99 nt) RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 4470516 NA (NA)intergenic (+195/+11) mgtA/ridA magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification
Rejected: Coverage evenness skew score above cutoff.

TGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTT  >  NC_000913/4470374‑4470653
                                                                                                                                                |                                                                                                                                         
tGTCCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCTATCATGCCCGGAtt                                                                                                                                           <  2:736596/143‑1 (MQ=37)
 gcacATGCCTGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAttt                                                                                                                                          <  1:824889/140‑1 (MQ=255)
 gTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGAttt                                                                                                                                          <  1:594605/143‑1 (MQ=255)
    cATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCa                                                                                                                                       <  1:262430/143‑1 (MQ=255)
      tGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCAAGTAGGACTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTGATCAGACTTAATCGGGGCATGATAGCACGGAtttgaatc                                                                                                                                     >  1:41338/1‑138 (MQ=37)
              gcggcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAg                                                                                                                             <  2:871080/143‑1 (MQ=255)
               cggcgTAAAGGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATGACGTAGGCCTGATAAGCGTAGCGCAGCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGc                                                                                                                            <  1:413850/143‑1 (MQ=255)
                     aaaGGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGcgtcgag                                                                                                                      <  2:162755/143‑2 (MQ=255)
                      aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAAc                                                                                                                     <  2:742338/143‑1 (MQ=255)
                         gCCTTAGCCGGCCATTAAAGTCATGATATTGCAGTAATCACGTCGGCCTGTTACGCTTTGCGCATCAGTCGATTTTGCGTTTGTCATCAGACTTAATTCGGTCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGc                                                                                                                  <  2:557190/143‑1 (MQ=255)
                          ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGGTTAGCGACGAACAGCg                                                                                                                 >  1:197022/1‑143 (MQ=255)
                            ttATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGAt                                                                                                               <  1:418303/143‑1 (MQ=255)
                            ttATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGAt                                                                                                               >  1:829489/1‑143 (MQ=255)
                             tATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATc                                                                                                              >  1:722097/1‑143 (MQ=255)
                               tCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGc                                                                                                            >  1:32143/1‑143 (MQ=255)
                                  ggCCAACAAATTCAATAAATTGAAGGAATCACTTAACCCTTATAAGCGTAGCGCATCAGGCGATTATGCGTTCGTCATCAGAGTTAATCCGGGCATGATAGCCCGGATTCCCGACAAGAATAGCGACGAACAGCGATCGCGTc                                                                                                         >  2:765094/1‑143 (MQ=37)
                                     caacaaATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGAt                                                                                                      <  1:42152/143‑1 (MQ=255)
                                     caacaaATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGAt                                                                                                      <  1:50865/143‑1 (MQ=255)
                                     caacaaAGTCAATAAATTGCAGGAATCACGTAGGCCGGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAGTCAGGGCATTGTAGCCCGGATTTCCATCGGGATTAGCGACGAACAGCGATCGCTTCGAt                                                                                                      <  2:912556/143‑1 (MQ=37)
                                       acaaATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGAtct                                                                                                    <  1:195268/143‑1 (MQ=255)
                                               aaTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCGATCAAGATTAGCGACGAACAGCGATCGCATCGATCTCAACCTTc                                                                                            >  2:109721/1‑143 (MQ=255)
                                                aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCAACCAAGATTAGCGACGAACAGCGATCGCTTCGACCTCAATCTTCa                                                                                           >  1:524267/1‑143 (MQ=255)
                                                 tAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCAc                                                                                          <  2:629101/143‑1 (MQ=255)
                                                         aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTCTCg                                                                                  >  2:641815/1‑143 (MQ=255)
                                                         aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCAGGGTATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCg                                                                                  >  2:813064/1‑143 (MQ=255)
                                                           gAATCACGTAGGCCTGAGAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCAGCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGc                                                                                <  1:864120/143‑1 (MQ=255)
                                                              tCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGCTCTCAATCTTCACGTCTTTCGGCAGa                                                                             >  1:492220/1‑143 (MQ=255)
                                                                aCGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACg                                                                           >  1:62756/1‑143 (MQ=255)
                                                                        cTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACtt                                                                   >  1:147095/1‑143 (MQ=255)
                                                                           aTAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTACTCCGGGCATGATAGCCCGGATTTCCATCAAGATTCGCGACGAACAGCGAGCGCTTCGATCTCAATCTTCACGTCTCTCGGCAGACGGGCAACTTCaa                                                                >  2:176499/1‑143 (MQ=255)
                                                                            tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAAc                                                               <  1:653999/143‑1 (MQ=255)
                                                                            aaaGCGGAGCGCATCAGGCGAGTTGGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAAc                                                               <  1:99958/142‑1 (MQ=255)
                                                                              aGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAAACAGAACAAAATAGTGCGGGTTGCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGc                                                             <  1:211823/143‑1 (MQ=255)
                                                                                      gcATCAGGCGATTTCGGGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGt                                                     <  2:901123/143‑1 (MQ=255)
                                                                                       gaTCAGGCGATTTTGCGTGTGTCAGCAGACGTAGTCCGGGCATGATAGGCCGGATGTCCAGCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTGTCGGCAGACGGGCAACTTCAACGCAAGAACGTg                                                    <  2:615021/142‑1 (MQ=255)
                                                                                        aTCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGc                                                   >  2:779096/1‑143 (MQ=255)
                                                                                          cAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCACGAACGTGCCg                                                 >  1:356110/1‑143 (MQ=255)
                                                                                          cAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATGTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGGCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCg                                                 <  2:931391/143‑1 (MQ=255)
                                                                                                  tttGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTg                                         <  1:628607/143‑1 (MQ=255)
                                                                                                     gCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCg                                      <  1:748682/143‑1 (MQ=255)
                                                                                                        tttGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAAAACGTACCGGGGAGGTGGCGTtg                                   >  2:259581/1‑143 (MQ=255)
                                                                                                             catcaGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTtgggatc                              >  2:472128/1‑138 (MQ=255)
                                                                                                              atcaGCCTTCAGCCGGGCATGATACCCCGTATTTCCCTCAAGCTTAGCGACGAGCAGCGGTGGTTTCGCTCTCAATCCTCACGTCGTTCGGCGGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCg                             <  2:279693/143‑1 (MQ=255)
                                                                                                               tcaGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCACCTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTCGTGTTCgg                            >  2:612628/1‑143 (MQ=255)
                                                                                                               tcaGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGACGGTGGCGTTGTGTTCgg                            >  2:444930/1‑143 (MQ=255)
                                                                                                                   gcttcttCCGGGCATGATAGCCCGGATGTCCATCAAGACTAGCGACGGACGTCGATCGCTTCGATCTCAATCTTCACGTCGTTCGGAAGACCGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTgaa                        <  2:609143/137‑1 (MQ=255)
                                                                                                                       gctgcGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGTCGAACAGCGATCGCTTCGTTCTCCATCTTCAGGTCTTTCGGCCGGCGGGCAGCTTCGGAGCGAGACCGGGCCGGGAAGGTGGCGTTGTGTTCGGTGaagaag                    <  2:375146/139‑1 (MQ=255)
                                                                                                                       aagccGGGGATGACAGCCCGGGTGTCAGTCAAGCTTGGCGGCGAACAGCGAGCGCTTCGATCTCAATCTTGCGGGCGTGTGGCAGACGGGCAACTTCAAGGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGaagtag                    <  2:894234/140‑1 (MQ=255)
                                                                                                                       aaTCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGaagaag                    <  1:440666/143‑1 (MQ=255)
                                                                                                                        agccGGGGATGAAGGCGCGGATTTCCAGCAAGATGAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAgg                   <  1:608209/141‑1 (MQ=255)
                                                                                                                         tCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCCATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGc                  >  1:586187/1‑143 (MQ=255)
                                                                                                                           cGGGCATGATAGCCCGGATTTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTTGGTgaagacgcca                 >  1:671087/1‑138 (MQ=255)
                                                                                                                              gCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTATTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGGTGGGTGCGGCGAAGAAGGCTTCGt             >  2:6078/1‑143 (MQ=255)
                                                                                                                                 aTGGTAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTaa           <  2:735431/143‑1 (MQ=255)
                                                                                                                                    aTAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCCATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTg        <  1:550825/143‑1 (MQ=255)
                                                                                                                                     tAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAGGTgg       >  1:376736/1‑143 (MQ=255)
                                                                                                                                         ccGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGt  >  1:844899/1‑142 (MQ=255)
                                                                                                                                          cGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCCTCGTAAGTGGCGttt  >  2:148017/1‑143 (MQ=255)
                                                                                                                                                |                                                                                                                                         
TGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTT  >  NC_000913/4470374‑4470653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.