New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1049778 =152 (0.780)18 (0.090) 3/478 NT 14.9% intergenic (‑34/‑55) gfcA/insA O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA
?NC_000913 = 4507640 53 (0.270)coding (979/1152 nt) insI1 IS30 transposase

TCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTCCTCTGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCAGGAATTTGTCGGTAAGAGCCTGATTTACTGAGACAGAATCTTTGCCCCTGAGTCTAAGGATGATCGTATAACGTGATTTTCGGTCTACAAGTGTGGCTATATGAGAGTTTTTTGTACCTGAGACTAAATCGCCCTCCCAA  >  NC_000913/4507369‑4507920
                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                        
tctcCTATAACACCACAACAAATCGAAACACGTAAGCTGAGGAAAAAGCTACAACGGATTGAATTGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACACCTTACAATTATCTCTTTCGGTTTTTTGAACTTCAGCGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATATAGTTAATGTTGAGTATATTGGGCACGCGAGGTCTTTTTAGGCAAGTACTGCCGATTTAGTCCATTTGTGTTCTCATTTGTTccc                                                                                                                                                                                                                                                                                >  1:1698740/1‑282 (MQ=18)
tctcCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTccc                                                                                                                                                                                                                                                                                >  1:569306/1‑282 (MQ=255)
  tcCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCg                                                                                                                                                                                                                                                                              <  2:1774386/282‑1 (MQ=255)
         acacCAGAACAAATCTAAAAACGGAAGCTGAGGAAAAAGGTACAACGGATTGAAAAGTAGAATGAAATATTCAAAAGGCTACTGTAGGTTCTATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGGCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAATTAATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGGCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCaa                                                                                                                                                                                                                                                                       <  1:1031671/282‑1 (MQ=17)
         acacCAGAACAAATCGAAATCCGGAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCACTGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCGAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCaa                                                                                                                                                                                                                                                                       <  2:1692842/282‑1 (MQ=255)
         acacCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATTTTGGGCAAGAGATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCAATTTGTGTTCTCATTTGTTCCTCGCTGc                                                                                                                                                                                                                                                                          >  2:699839/1‑279 (MQ=255)
          cacCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAg                                                                                                                                                                                                                                                                      <  1:11013/282‑1 (MQ=255)
                     aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACTCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGATCTGTTGTTTAGCTGAGCATCAAACCGCTCTAGCTCTTGTTGAGTAAATTGGGCAAGAAATGTTTTTTTAGGAAAGGACTGCCGAATTAACCCATTTGTGTTCTCTTTTGTTCCCAGCTGCCAAGTACTCTGAGGa                                                                                                                                                                                                                                                           >  1:1890109/1‑282 (MQ=18)
                     aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTTTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGa                                                                                                                                                                                                                                                           >  2:1294159/1‑282 (MQ=255)
                     aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACAAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGa                                                                                                                                                                                                                                                           >  2:1891209/1‑282 (MQ=255)
                        gAAATAAGTAAGCTAAGGAAAAAGTTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTGAATGCAACACCCCTTTCAATTATCGCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGCCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCg                                                                                                                                                                                                                                                        <  1:200929/282‑1 (MQ=255)
                           aTACGTAAACTGAGGAAAAAGCTACCACGGATTGAAAATGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTGTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATAGTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAg                                                                                                                                                                                                                                                     <  1:1476995/282‑1 (MQ=255)
                                tAAGCTGGGGAAAAAGCTACAAAGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTATTTCGGTTTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTATAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTa                                                                                                                                                                                                                                                <  1:1879613/282‑1 (MQ=255)
                                 aaGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTccc                                                                                                                                                                                                                                                                                >  1:1006026/1‑249 (MQ=255)
                                 aaGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTccc                                                                                                                                                                                                                                                                                <  2:1006026/249‑1 (MQ=255)
                                 aaGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTa                                                                                                                                                                                                                                                <  2:214862/281‑1 (MQ=255)
                                    cTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAAc                                                                                                                                                                                                                                             >  2:28690/1‑281 (MQ=255)
                                       aGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTa                                                                                                                                                                                                                                         >  1:326272/1‑282 (MQ=255)
                                       aGGAAAAAGCTAAAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTATTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACAGCAGAATTAGCCAATTTGTATTCTCATTTATTCCCAGCTGCCAAGGACTCTGAGGATCGCCGAAGTAAACTTTa                                                                                                                                                                                                                                         >  1:1851868/1‑282 (MQ=255)
                                         gAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTACATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTaa                                                                                                                                                                                                                                        >  1:1087180/1‑281 (MQ=255)
                                            aaaGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGc                                                                                                                                                                                                                                     <  1:1294159/281‑1 (MQ=255)
                                              aGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCg                                                                                                                                                                                                                                                        >  1:1652403/1‑260 (MQ=255)
                                              aGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCg                                                                                                                                                                                                                                                        <  2:1652403/260‑1 (MQ=255)
                                                   cAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCGCTTTCGGTATTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCCAGTTCATGTTGACTATATTGGGCAAGACATGTCTTTTTAGGAAAGTAATGCCGAATTAGCCCAATTGTGTTCTCATTTGATCCCCGCTGCCAAGGACTCTGAGGATAGCGGAAGTAAACTTTAACGCCGGTGCTg                                                                                                                                                                                                                             >  2:1329243/1‑282 (MQ=255)
                                                        gagtGAAATGTCGAATGCAATATTAAAAAGGGTACGGTACATTCAAACTGTCAAGGCAAAACCCCTTTGAATTATCTCTTTCGGTGTGTTGAACTTCAGTTTCTTTCTCGGGCTGTTGTTTATCTGGGCAGTCACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGt                                                                                                                                                                                                                        <  1:1872435/279‑1 (MQ=11)
                                                         aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTa                                                                                                                                                                                                                       <  2:325171/282‑1 (MQ=255)
                                                         aTTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTACCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTa                                                                                                                                                                                                                       <  1:160817/282‑1 (MQ=255)
                                                         aTTGAAAAGAAGAATTAAATAATAAAAAGGCTACTGTAGATTCAATCTATCAATAGAACACCCCTTTCGATTGTCTCTTTCGGGGTTTTGAACTTGAGTGTCTTTCTCGGTCTGTTGATTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTa                                                                                                                                                                                                                       <  1:1636061/282‑1 (MQ=11)
                                                                 ggAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTATTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTa                                                                                                                                                                                                                <  2:627870/281‑1 (MQ=255)
                                                                 ggAGAATGAAATAGTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCCATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGGCATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTGCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTa                                                                                                                                                                                                                <  2:1644043/281‑1 (MQ=255)
                                                                  gagaATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGAAGAAGTAAACTTTAACCCGGGTGCTTACAGTAAATTCTAg                                                                                                                                                                                                               >  1:1361709/1‑281 (MQ=255)
                                                                   agaATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGa                                                                                                                                                                                                              >  2:403898/1‑281 (MQ=39)
                                                                     aaTGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGt                                                                                                                                                                                                           >  2:740404/1‑282 (MQ=38)
                                                                          atcctgaattttaacaggttgaaTTGAAACTGTCAATGCAACACCCCCTTCAATTATCTCTTTCGGTGTTTTGAACTTCATTGTCTTTCTTGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGGGTGTATTGGGCAAGACATGTCTATTTAGGAAACTACTGCCGAATTATCCCATTTGTGTTCTCATATGTTCCCCGCAGCCAAGGACTCTGAGAATCGCAGAAGTAAACTTTAACGCCGGTTGTGACAGTAAATTCTAGATGTCTGGc                                                                                                                                                                                                      <  1:1459322/260‑1 (MQ=11)
                                                                           atatTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGc                                                                                                                                                                                                      <  2:1154603/281‑1 (MQ=35)
                                                                           atatTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAAGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGc                                                                                                                                                                                                      <  2:976439/281‑1 (MQ=25)
                                                                            tatTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTTTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTCGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTAGTAAAGTACTGCTGAATTCGCCCCTTTGGGTTCTCATTTGTTCCCCGCTGCCAAGAACTCTGAGGATCGCAGAAGTAAACTTTAACGACGGTGCTGACAGTAACTTCTAGCTGTCTGGCCa                                                                                                                                                                                                    >  2:994043/1‑281 (MQ=11)
                                                                             atTAAAAAGGCTACTTTAGAGTCAATCTGTCAATGCAAAACCCCTTTCAATTATCTCTTTCGGTGTTTTTAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGTCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAg                                                                                                                                                                                                   <  1:1772413/282‑1 (MQ=19)
                                                                             atTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGcc                                                                                                                                                                                                     <  1:28690/280‑1 (MQ=35)
                                                                             atTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAg                                                                                                                                                                                                   <  1:475896/282‑1 (MQ=35)
                                                                             atTAAAAAAGTTACTGTGGATTCAAGCTGTCAATGAATCAACCCTTTCAATTATCTCTTTCGGTTGTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGGTTAGCTGAGCAGCAACCTGAACTAGTTCATGTTTCGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAAGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAg                                                                                                                                                                                                   <  1:626507/282‑1 (MQ=11)
                                                                                 aaaaGGCTACTGTAGATTCAATCTGTCAATGCAACACACCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGAAGCAACTAGCTCTAGTTCATGTTGAGTATATTGTGCAAGACATGTCTTTTTAGGAAAGTACTGCCGACTTAGCACATTTGCGTTCTCATTTGTTCCACGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCAGGTTCTGACAGTAAATTCTAGATGTCTGGCCattacc                                                                                                                                                                                               >  1:1179496/1‑277 (MQ=11)
                                                                                 aaaaGGCGACTGTTCATTCAACCTTGCAATGCACCACCCCTTTCACTTATCTCTTTGGTTTTTTTTAACTTCAGTTTCTTTTTCGGTCTATTGTTTTGCTGAGCAGCAACCAGTTCTAGTTCATGTTGAGTATATTTGGCAAGACATGGCTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGTTGATCGCATCAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCa                                                                                                                                                                                              <  1:994043/282‑1 (MQ=11)
                                                                                  aaaGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTACATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCa                                                                                                                                                                                              <  2:1087180/282‑1 (MQ=18)
                                                                                      gctgcttgagatttcatCCGTAAATGCAACACCCCTTTTATCTGTATCTGTCGGTGTTTTGAACTTCAGTGGCGTTCTCGGTCTGTTGGTGAGCTGAGCAGCAACCATATCGAGGTAATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGTGAGTACTGCCGAATTAGCCCATTGGTGTTCTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggttctccagtggcttctgtttctatcagctgtccctcctgttcagctac                                                                                                                                                                                          >  1:1997009‑M2/9‑186 (MQ=255)
                                                                                      gCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTc                                                                                                                                                                                           >  2:1324747/1‑281 (MQ=31)
                                                                                       cTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTCct                                                                                                                                                                                         <  1:1471440/282‑1 (MQ=31)
                                                                                       cTACTGGAGTTTCCATCTGTCAATGCAACACCCCTTTCAATTATCTCGTTCGGTGTTGTGAACTTCAGTGTCTTTTTCGGTCGGTTGGTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTTAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTATCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACTGTAAATTCTAGATGTCTGGCCAGTTCCATTCct                                                                                                                                                                                         <  1:23474/282‑1 (MQ=11)
                                                                                        tccTGTAGATTCCATCTGTCAATGCAACACCCCCTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCATCAACCAGATCTAGCTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCAGTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGGTCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTCctc                                                                                                                                                                                        <  2:1329668/280‑1 (MQ=2)
                                                                                                       cTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaactta                                                                                                                                                                                                                                                                        <  2:1143358‑M2/187‑19 (MQ=255)
                                                                                                       cTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaactta                                                                                                                                                                                                                                                                        >  1:1143358‑M2/1‑169 (MQ=255)
                                                                                                          tCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgattt                                                                                                                                                                                                                                                                 >  1:515279‑M2/1‑166 (MQ=255)
                                                                                                          tCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgattt                                                                                                                                                                                                                                                                 <  2:515279‑M2/191‑26 (MQ=255)
                                                                                                                    acCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt                                                                                                                                                                                                                                                                  <  2:40016‑M2/180‑25 (MQ=255)
                                                                                                                    acCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt                                                                                                                                                                                                                                                                  >  1:40016‑M2/1‑156 (MQ=255)
                                                                                                                                                        cAGTGTCTTTCTCGGTCTGTTGTTTAGCTGGGCAGCAACCAAATCTCGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTTTTCGCggtgatgccgccaacttactgatttagtgtatgatgctgtttttgaggttctccagtggtttctttttctatcagacgtccctcctgttcagctactgccggggtggttgttaacggctaaagcattgccggcaccactcgctatctctgccttcaccgcct                                                                                                                        <  1:1963846‑M2/282‑163 (MQ=255)
                                                                                                                                                                ttCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt                                                                                                                                                                                                                                                                  <  1:639432‑M2/136‑25 (MQ=255)
                                                                                                                                                                ttCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt                                                                                                                                                                                                                                                                  >  2:639432‑M2/1‑112 (MQ=255)
                                                                                                                                                                     ggTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt                                                                                                                                                                                                                                                                  >  1:1859655‑M2/1‑107 (MQ=255)
                                                                                                                                                                     ggTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatt                                                                                                                                                                                                                                                                  <  2:1859655‑M2/131‑25 (MQ=255)
                                                                                                                                                                                   cttagcagcAACCAAATCTAGTTCATGTTGAGTAGAATGGGCAAGACATGTTATGTGAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCAATTATTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACTCCGGTGCGGACAGTAAATTCTGGATGTCTGGCCAGTTCCATTCCTCAGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCAGGAATTTGTCGGTAAGAGCCTGATTTACTGATACAGAATCTTGGccccg                                                                                             <  1:835351/279‑2 (MQ=1)
                                                                                                                                                                                       tgagaaaCCAGATCTAGTTTATGTTGAGTATATTGGTCAAGAAATGTTTTTTTCTGAAATTGCTGCCCAATTAGCCCATTTGTGTTCTCCTCTGTTCCCCTCTGCCTAGTACGCTGAGGTTCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGCTGTCTAGCCAGTTTCATTCCTCTGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCACGAACTTGTCGGTCAGCGCTTGATTTACTGAGACAGAATCTTTGCCCCCGAGt                                                                                         <  1:398090/277‑1 (MQ=1)
                                                                                                                                                                                           caACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaactta                                                                                                                                                                                                                                                                        >  2:614755‑M2/1‑85 (MQ=255)
                                                                                                                                                                                           caACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaactta                                                                                                                                                                                                                                                                        <  1:614755‑M2/103‑19 (MQ=255)
                                                                                                                                                                                                       gTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatttagtgtatga                                                                                                                                                                                                                                                        >  1:1416785‑M2/1‑73 (MQ=255)
                                                                                                                                                                                                       gTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgccaacttactgatttagtgtatga                                                                                                                                                                                                                                                        <  2:1416785‑M2/107‑35 (MQ=255)
                                                                                                                                                                                                         tcctGTTGATGATATTGGGCAATACATGTCTTTTTAGGAAAGTACTGCCGAATTCGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTCCTCTGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCAGGAATTTGTCGGTAAGAGc                                                                                                                           <  1:1170575/227‑1 (MQ=0)
                                                                                                                                                                                                            tGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCggtgatgctgctaacttactgatttagtgtaagatggagtttttgacgttctccagtggcttctgtttctatccgctgtccctcctgttcagctactgacggggtcgtccgtaacggcaacagcactgcccgacagcaacgctatctctgctcgtacttcggtaaaaccttgcaacgccccttcccttacactgctcctcaacccggtaaccac                                                                    <  1:1939836‑M2/282‑215 (MQ=255)
                                                                                                                                                                                                                  ggttttttggCAAGACATGTCTTTTTACGAAAGTACTGCCGAATTAGCCCATTGTTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTTGATGTCTGGCCAGTTCCATTCCTCTGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCAGGAATTTGTCGGTAAGAGCCTGATTTACTGAGACAGAATCTTTGCCCCTGAGTCTAAGGATGATCGTATAACGTGAtttt                                                              <  1:1016308/274‑1 (MQ=0)
                                                                                                                                                                                                                    atgttGGGCAAGACACGTCTTTTGATGTACATACTGCCGAATTAGCCCATTTGTGTTCCCATTTGTGCCCCGCTGCCAAGGACTCTGACGATCGCGGAAGTAAACTTTAACGCCGGTGCTGACAGTAAAATCTAGATGTCTCGCTAGTTCCATTCCTCTGTCCCACGTCAGTGATTATCTGAGTTCTGACGGTAAACTCAGGAACTTGTCGGTAAGAGCCTGATTTACTTATACAGAATCTTTGCCCCTGAGTCTCAGGATGATCGTATAACGTGATTTTCg                                                            <  1:1886005/279‑1 (MQ=1)
                                                                                                                                                                                                                                                                  acaTTTGTGGTCTCggtgattctggcaacttactgatttggtgcatggtggtgtttttgaggttcttcagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggttcgtaacggcaaaagcactgccgaacatcagcgctatctctgcgctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcatggatatggccatgaatggcgttggatgccgggcaaccgcccg               >  1:864050‑M2/2‑14 (MQ=255)
                                                                                                                                                                                                                                                                              tcggtgatgctgccaacttactgaattagtgtatgatggtgtttttgaggtgctccagtggcttctatttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgcaggacatcagcgctatctctgctctccctgccgtaaaacttggcaactgccgttcacttacaccgcttctccacccggtacgcaccagaaaatcattgatatggccatgaatggcgttggatgccgggcaacacaccgcattatgggcgtt  <  1:838935‑M2/282‑281 (MQ=255)
                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                        
TCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGTAAATTCTAGATGTCTGGCCAGTTCCATTCCTCTGTCCCATGTCAGTGATTTTCTGAGTTCTGACGGTAAACTCAGGAATTTGTCGGTAAGAGCCTGATTTACTGAGACAGAATCTTTGCCCCTGAGTCTAAGGATGATCGTATAACGTGATTTTCGGTCTACAAGTGTGGCTATATGAGAGTTTTTTGTACCTGAGACTAAATCGCCCTCCCAA  >  NC_000913/4507369‑4507920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.