New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 227039	43 (0.910)	12 (0.270)	4/270	6.4	22.6%	noncoding (1281/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	2727895 =	NA (NA)					noncoding (1288/2904 nt)	rrlG	23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

AAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGC  >  NC_000913/226900‑227128                                                                                                                                            |                                                                                          aaaCCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGa                                                                                        >  1:691017/1‑143 (MQ=38)  aaCCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTCGGCCTGTGAAGGTGTACTGTGAGGTATGCGGGAGGTATCAGAGGTGCGAATGCTGACGTAAGTAACGATAACACGGGTGac                                                                                       >  2:332856/1‑142 (MQ=11)  aaCCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGCTAAAGCGGGTgcc                                                                                       >  1:397346/1‑141 (MQ=37)    gcgtGCCCCGAACCTGCGGCAGCGACGCTTATGGGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa                                                                                     <  1:750960/140‑1 (MQ=255)    ccATGCACCGAAGCTGCGGCGGCGACGCGTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa                                                                                     <  1:796579/143‑1 (MQ=255)    ccATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGCTATCAGAAGTGCGAATGCTGACATAAGGCAGGATAAAGCGGGCGaaac                                                                                     >  2:172146/1‑142 (MQ=11)      aTGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAATTAACGATAAAGCGGGTGAAAAGc                                                                                   >  2:825763/1‑143 (MQ=38)          aCCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCCGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATACGTAACGATAAAGCGGGTGAAAAgcgcgc                                                                               >  1:368026/1‑143 (MQ=255)           ccGAAGCTGCGGCAGCCACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCGGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgggcttttcacccgct                                                                              <  1:124707/143‑14 (MQ=14)            cGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATCCTGACATGAGTCACGATAAAGCGGGTGAAAAGCACGCTc                                                                             >  1:613398/1‑143 (MQ=255)              aaGCGGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGc                                                                           <  1:589553/143‑1 (MQ=38)                 cTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCgg                                                                        >  1:532142/1‑143 (MQ=38)                  tGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGACGGTGTACTGTGAGGTAGGCTGGCGGTATCAGAAGTGCGCGTGCTGACCTAAGTAACGATAACGCGGGGGAACGGCCCGCCCGGCgcc                                                                       >  2:619694/1‑141 (MQ=11)                  tGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAAGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATCAGTAACGATAAAGCGGGAGAAAAGCCCGCTCGCCGGa                                                                       >  2:423888/1‑143 (MQ=255)                   gCGGCAGCGATGCGTATGGTGTGGTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTTGGGTTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTATCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                                      <  2:733102/143‑1 (MQ=11)                    cGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGagg                                                                     >  1:123973/1‑141 (MQ=38)                      gccgCGACGCTTATGCGTTGTTGGGGAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAc                                                                   <  1:461217/140‑1 (MQ=255)                        agggacggtgaggCGTTGTTGGGTAGGGGAGCGTGCTGTACGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCa                                                                 <  2:7128/131‑1 (MQ=11)                        aGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGCAGGTGTACTGTGAGGTATGCTGGAGGTATCAGGAGTGCGAACGCGGACATAAGTAACGATAAAGCTGGCGAAAGGCACGCTCGCCGGCAGagcc                                                                 >  2:495100/1‑140 (MQ=11)                         gCGACGCTTATGCGTTGGTGGGCTGGGTAGCGTTCTTTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATACAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCaa                                                                <  1:26623/143‑1 (MQ=11)                          cGACGCTTAGGCGGTGTTGGGTGGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAg                                                               <  2:692897/143‑1 (MQ=255)                               cTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc                                                          <  1:819695/143‑1 (MQ=38)                                 tATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt                                                        <  1:581816/143‑1 (MQ=37)                                  aTGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGGAGACCAAGGGTTGCTg                                                       >  1:354442/1‑143 (MQ=255)                                   tGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGCAATACGTAACGATAAAGCGGGTGAAAAGCCCGCTCACCGGAAGAACAAGGGTTACTga                                                      >  2:495210/1‑142 (MQ=11)                                     cGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGCAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc                                                    >  2:349279/1‑143 (MQ=25)                                       ttgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCGAGGGTTCCTGTCCaa                                                  >  2:526371/1‑143 (MQ=21)                                        tgttgGGTAGGGGATCGTGCTGGAAGCGTGTGAAGGTGTACTGTGAGGTATGCTGTAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATATAGCGGGTGAAAAGCCCGCTCGCCGGAAGTCCAAGGGTTCCTGTCCAAc                                                 <  2:328071/143‑1 (MQ=11)                                        tgtggGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAc                                                 <  1:477774/143‑1 (MQ=25)                                            gggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTa                                             >  1:115825/1‑143 (MQ=35)                                                 ggggAGCGGGCGGTAAGCCTGGGAAGGTGTACTGTGAGGGATGCGGGAGGTATCAGAAGTGCGAAGGCTGACATAAGTAGCGATAGAGCGGGTGAAAAGCCCGCTGGGCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgg                                        <  2:810388/143‑1 (MQ=11)                                                  gggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                                       >  2:302992/1‑143 (MQ=35)                                                  gggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGCGAGGTAGGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCGGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                                       >  2:292979/1‑143 (MQ=255)                                                         ttCTGTAAGCCGGTCAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt                                <  1:717754/143‑1 (MQ=21)                                                           cTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGa                              <  1:728733/143‑1 (MQ=35)                                                             gTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAAGGATAAAGCGGGTGAAAAGCCCGATCGCCGGAAGACCAAGGGTTACTGTCCAACGAAAAACGGTGATGGGTGatg                            >  2:439951/1‑141 (MQ=11)                                                                aGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTCACGCTAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCgc                         >  1:116488/1‑142 (MQ=255)                                                                aGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGa                         <  1:504690/143‑1 (MQ=35)                                                                   ccgtgAAGGTGGACGGTGCGGTATGCTGGAGCTATCAGAAGTGCGAATGCTGACATAAGTACCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCACATGCTCGTGTCCAACGTTAATCGGGGCAGTGTGAGTCGAccc                      <  2:177568/141‑1 (MQ=11)                                                                   cTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc                      <  1:407465/143‑1 (MQ=35)                                                                        aaGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAg                 >  1:85217/1‑143 (MQ=35)                                                                             gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGGGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCGCTACGGCGAg            >  2:736996/1‑143 (MQ=255)                                                                                 tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCg        >  1:424277/1‑143 (MQ=32)                                                                                     aGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAg    >  1:167806/1‑143 (MQ=32)                                                                                       gTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAGAGCCCGCTCGCCGGTATACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc  <  1:309271/143‑1 (MQ=9)                                                                                                                                            |                                                                                          AAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGC  >  NC_000913/226900‑227128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.