New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	925857 =	58 (1.230)	4 (0.090) +ACGGGCTTTTT	3/260	6.8	7.0%	intergenic (+317/+27)	clpA/serW	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
	?	NC_000913	1097195 =	NA (NA)					intergenic (+366/+370)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTTATTAACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGG  >  NC_000913/925718‑925998                                                                                                                                            |                                                                                                                                              cTTTATTAACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACtt                                                                                                                                            >  1:808701/1‑143 (MQ=255) cTTTATTAACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACtt                                                                                                                                            >  1:534452/1‑143 (MQ=255)          caacGGGCTAAGCGTGTAGTATTTGAGTTCACTGCCGCACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAg                                                                                                                                   <  1:144177/143‑1 (MQ=255)               ggCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCtctt                                                                                                                              >  1:434573/1‑143 (MQ=255)                gCTAGACGTGTAGTATTTGAGTTCACTGCCGTACATGCAGCTTAGAAATTCACAGGTAACATACACCACCCGCCCACCATGTTCACTGCCGGACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCtcttc                                                                                                                             <  1:324426/143‑1 (MQ=255)                   aaccGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCttt                                                                                                                          <  1:685304/140‑1 (MQ=255)                    aaCGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAAGGCGAAAAAACAGCTCGCACTCTCGTACGAGCTcttcttaa                                                                                                                         >  2:598868/1‑141 (MQ=255)                      ggtgtAGTATTTGAGTCCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCCCCAGTTTCGCTGCCGTACATACAAAAAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTaaa                                                                                                                       <  1:565101/142‑1 (MQ=38)                              aTTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAAAGCGAAAAAAAAGCTCGCACTTACGTAAGAGCTCTTCTTGAAATATGGCgg                                                                                                               >  2:823375/1‑143 (MQ=255)                                     ttCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggg                                                                                                        >  1:324588/1‑143 (MQ=255)                                     ttCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggg                                                                                                        >  1:352763/1‑143 (MQ=255)                                      gcACTGCGGTACAGGCAGCTTAGAAATTCACAGGGAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                                                                       <  2:407081/142‑1 (MQ=255)                                       cACGGCCGTACAGGCAGCTGAGAAACTCACAGGTAACACACTCCACCCGCCCACCATGTTCACTGCCGGACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggggg                                                                                                      <  1:207658/143‑1 (MQ=38)                                          tGCCGTACGGGCAGGTAAGAAATTCACGGGTACCTTACCCCACCCGCCCACCATGTTCACGGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAt                                                                                                   <  1:491667/143‑1 (MQ=25)                                           gCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAtt                                                                                                  >  1:226836/1‑143 (MQ=255)                                               tACATGCAGCCTAGAACTTCACAGGTACCCTCCTCCACCCGCCCACCCTGTTCACTGCAGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                                                                                              <  1:435196/143‑1 (MQ=25)                                                acgggcggcTTAGAAATTCACAGGTAACATACTCCGCCCGCCCACCGTGTGCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc                                                                                            <  2:274801/140‑1 (MQ=25)                                                  aGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAGATGTGGCGGTGAGGGGGGGATTCGAAccc                                                                                           >  1:263113/1‑143 (MQ=255)                                                   ggCAGCTCAGAAATTCACAGGTAACATACTCCCCCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCGCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGG‑‑TTCGAAtccccc                                                                                        <  1:541205/143‑2 (MQ=37)                                                    gCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGAT‑AAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGCGAGGGGGGGATTCGAACCCCCg                                                                                        >  2:423074/1‑143 (MQ=255)                                                    gCAGCGTAGCAATTCACAGGTACCATGCTCCTCCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc                                                                                         <  1:428585/143‑1 (MQ=25)                                                      aGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGa                                                                                       <  1:149393/143‑1 (MQ=255)                                                         ttAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACCGATAAAATGCGAAAAAAAAGCTCGCACTGTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGAGGGGGACACGCACCCCAGATAc                                                                                    >  2:25128/1‑143 (MQ=37)                                                         ttAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGGGCACTACGTCAAATATGTCTGGGAGGGGGGGATTCGAACCCCCGaaca                                                                                    >  2:326866/1‑140 (MQ=37)                                                            gAAATTCACAGGTAACAGACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt                                                                                 <  2:749590/143‑1 (MQ=255)                                                                  cacaGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATACAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAAAATGGCGGTGCGGGGGGGATAGGTACCCCCGATACGCTGCCGtc                                                                           >  2:536702/1‑142 (MQ=25)                                                                    caGCTAACATCCTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGtata                                                                         <  2:390112/143‑1 (MQ=255)                                                                      ggTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATaca                                                                       <  1:793754/143‑1 (MQ=255)                                                                       gagactgatcgcACCCGCCCCGCATGGTCACTGCCTGACAGACAGATAAAAGGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATacac                                                                      <  1:798107/132‑1 (MQ=17)                                                                         aaCATACTCCACCCGCCCACCCTGTTCCCTGCCGTACAGACATAGAAAATGCGAAAAAAAAGCTGGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATacacac                                                                    <  2:667276/143‑1 (MQ=21)                                                                           cATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACtt                                                                  >  2:484053/1‑143 (MQ=255)                                                                            aTACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGCAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGAGGGACTCGAACCCCCGATACGGTGCCGtagagaaacgat                                                                 >  2:653668/1‑133 (MQ=21)                                                                                tCCACCCGCCCACCATGTTCCCTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAg                                                             <  2:447765/143‑1 (MQ=255)                                                                                tCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAg                                                             >  1:32970/1‑143 (MQ=255)                                                                                   aCCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCGGGCg                                                          >  1:386795/1‑143 (MQ=255)                                                                                       gCCCACCTTGTTGACCGCCGTGCCGACTGACACAATGCCAAAAAAAAGCTCGCACGTTCGTACGGGCTCTTCTCTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCt                                                      <  2:380719/143‑1 (MQ=14)                                                                                           accaTTTTCACGGCCGTACAGACAGATAAACTGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTGCATTATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCtt                                                  <  2:38031/143‑1 (MQ=17)                                                                                            ccaTGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTc                                                 >  1:706742/1‑143 (MQ=255)                                                                                             caTGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTGTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGCTCCGCTGCGGTATACACACTTTCCAGGCGTGCTGCTTCa                                                >  2:11760/1‑143 (MQ=18)                                                                                              aTGTTCACTGCCGTACAGACAAATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAg                                               <  2:238111/143‑1 (MQ=255)                                                                                               cgTTCTCTTCCGTCCAGGGAGGCAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGCTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGc                                              <  1:637588/142‑1 (MQ=14)                                                                                                 ttCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGCGAGGGGGGGATTCGAACCCCCGATACGGTGCCGTCTCCACACTTGCCAGGCGTGCCCCTTCAGCCa                                            >  2:41510/1‑143 (MQ=18)                                                                                                    aCTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACCCACTTTCCAGGCGTGCTCCTTCAGCCGCTc                                         >  1:737266/1‑143 (MQ=255)                                                                                                            acagacagATAAAATGCGAAAAAAATGCTCGCTCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCt                                 <  1:213044/143‑1 (MQ=255)                                                                                                                acagaTAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGTGCTTCATTAAATATGGCGGCGAGGGGGGGATTCGAACCCCCGATACGTTGCCGGATCAACCCTTTCCAGGCGTCCTCCACCAGCCACCCGGacacacaacc                             >  2:252006/1‑137 (MQ=14)                                                                                                                acagaTAAAATGCGAAAAAAAAGCTCGCACTTGCGTACGAGCTCTTCTTTAAATGTGGCGTTGAGGGGGGGGTTCGAACCCCCGATACGTTGCGGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCAcc                             >  1:177234/1‑143 (MQ=14)                                                                                                                  agagAAAAGGCGAAAAACAAGCTCGCACTTTCGTACGAGCCCTTCGTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCaa                           <  1:71091/143‑1 (MQ=11)                                                                                                                      aaaaTGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTCAACGGGGAACTCCAACCCCCGATACGTTGCCGTATACACAATGTCCCGGCGTGGTGCTTGCGACCATCGGACACCTAACCAAAttc                       >  2:370146/1‑142 (MQ=14)                                                                                                                       aaaTGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCATTCAGCCACTCGGACACCTCACCAAATTGt                      >  1:585395/1‑143 (MQ=255)                                                                                                                         aTGCG‑AAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGtttt                   <  2:227748/143‑1 (MQ=37)                                                                                                                           gCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTg                  <  1:645359/143‑1 (MQ=38)                                                                                                                             gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCGGCCACCCGGACACCTCACCAACTTGTTTTGCt                >  1:255827/1‑143 (MQ=255)                                                                                                                             gAAAAAAAAGCTCGCACTTTCGTACAAGCTATTCTTTAAATAAGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACCTTCCAGGCGTGCACCTTCCGCCAACCGGACACCTCACACAATTCTTTTGCt                >  2:678908/1‑143 (MQ=14)                                                                                                                               aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTAc              <  2:689624/143‑1 (MQ=40)                                                                                                                                        tCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTTCTGCAGCCCCTCGGACACCCCACCAAATTGTTTTGCTACCAAACCTCa     >  2:173269/1‑143 (MQ=255)                                                                                                                                        tCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCACATTGTTTTCCTACCAAACCTCa     >  2:274042/1‑143 (MQ=255)                                                                                                                                           cACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATgg  <  2:226836/143‑1 (MQ=255)                                                                                                                                           cACTTTCGTACGAGCTCTTCTTTAAATATAGCGGTGAGGGGGGGATTCGAACCCCCGATACGCTGCCGTATCCACACTTTCCCGGCGTGCCCCCTCAGCCACCACCACACCTCACCCAATCGTTTTACCACCAACCCGCAtcc  >  2:314110/1‑141 (MQ=11)                                                                                                                                            |                                                                                                                                              CTTTATTAACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGG  >  NC_000913/925718‑925998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.