| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,858 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815858 | 3815939 | 82 | 46 [0] | [0] 46 | [rph]–[rph] | [rph], [rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815857 | 0 (0.000) | 41 (0.940) | 36/262 | 0.2 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| ? | NC_000913 | 3815940 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH | |||||
CCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGG > NC_000913/3815719‑3815995 | ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc < 1:550678‑M1/143‑5 (MQ=255)ccTGCTCGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGGCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc < 1:543168‑M1/143‑5 (MQ=255) cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTCCCGAC‑AAAAAACAGGCGACTCATCAGTCGCCTTAAAAATCACTTTGCCAGCGCCGCCCTCTGCcgtcc > 1:647539‑M1/1‑138 (MQ=255) tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc < 1:382153‑M1/143‑7 (MQ=255) tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGCCTCATCAGTCGCCTTAACAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcact > 1:16213‑M1/1‑130 (MQ=255) tAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAACAAGGCGCCTCATCAGTCGCCTTAAAAATAAGTTTGCCAGCGCCGCCTTCTGCcgtcccccgcacttcaatgatccgcccg > 2:815967‑M1/1‑115 (MQ=255) aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTCTTCTACCGTC‑AGAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtc < 1:692155‑M1/143‑31 (MQ=255) aCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAACAAAAGGCGACTCATCCGTCGCCTTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactgcaatgatgcccccggcc > 1:147472‑M1/1‑112 (MQ=255) tGGCGCTGATATGGATTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTATGCAAGCGCCGCCTGCTGCcgacacctgcacttcaacgaacagcctgtcttc > 2:549‑M1/1‑110 (MQ=255) tgtcgttccttcgctcCTCGTCTTACTTTTCTACAGAC‑AAGAAAAAGCCGCCTCATCAGTCGCCTTAAATATCAGTGTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacct < 2:552784‑M1/136‑48 (MQ=255) cATGCCTTCGCTCCTCCTCTTACTTTTCTACAGACGAAAAAAAAGGCGGCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc < 2:620299‑M1/143‑50 (MQ=255) gCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTATGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctccggtgctcactacattactgt > 2:827950‑M1/1‑90 (MQ=255) ttCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg > 1:458378‑M1/1‑87 (MQ=255) tCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt < 1:493315‑M1/143‑58 (MQ=255) cctcATCTTACTTTTCTACAGCC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtaccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctg < 1:276512‑M1/143‑63 (MQ=255) tcATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcg < 1:798741‑M1/143‑65 (MQ=255) cATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg > 1:504407‑M1/1‑78 (MQ=255) tcgcactttTCCACAGCC‑AAAACAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTGCTGCcgtcccccgcacttcaatgatgcgcccgtcttcgggcatcactacgttcatgtcggtctctgcggca < 1:676034‑M1/139‑68 (MQ=255) ttACCTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcgtcggtcatcactacgttcatgtcggtctctgcggcaga < 1:9382‑M1/143‑70 (MQ=255) cgttgctaccgAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtc < 1:791839‑M1/138‑73 (MQ=255) tttCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt < 1:53832‑M1/143‑75 (MQ=255) tACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctccccccacgtccgtccccccgccagagtctccaac > 2:105665‑M1/1‑65 (MQ=255) aC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatt < 1:580722‑M1/143‑84 (MQ=255) aC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatccgcccgtcttcggtcatcactacgttcatgtcagccactacgccaaagaattaaacgtatt > 1:808786‑M1/1‑60 (MQ=255) aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattac > 1:685463‑M1/1‑58 (MQ=255) aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcac > 2:739271‑M1/1‑58 (MQ=255) aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcac < 1:739271‑M1/100‑43 (MQ=255) aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccag > 1:313662‑M1/1‑56 (MQ=255) aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctccaacgtattccag > 1:473197‑M1/1‑56 (MQ=255) cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaa < 2:823077‑M1/143‑96 (MQ=255) tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttgaacggattccagaccgcaaaccgc > 2:398254‑M1/1‑44 (MQ=255) atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctg > 2:67352‑M1/1‑42 (MQ=255) tcaggggcctgaaACATCAGTTTGCCAGCGCCGCCTTCGGCcgtccgctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttc < 1:204898‑M1/137‑103 (MQ=255) caGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcg > 1:558724‑M1/1‑40 (MQ=255) ccTTAAAAATCAGTTTGCCAGCACCGCCTTCTGCggtccccagcacggcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc < 1:305526‑M1/143‑110 (MQ=255) cgtTTGCCAGCGCCGCCTTCTGCcgtcccgtgcacttcaatgacgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac < 2:647539‑M1/142‑121 (MQ=255) cgtTTCCCATCGCCGCCTCCTGCcgtcccctgcacctcaagtatgcgcccgtcttcggtcatcactacgctcatgtcggtctctgccgcagagtcttcaacgtactccagatcgcaaaccgcttcgccgttcacaattccgac < 2:76311‑M1/142‑121 (MQ=255) gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgaca < 2:132006‑M1/143‑122 (MQ=255) tGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacacttccgacagaa > 1:510283‑M1/1‑19 (MQ=255) cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaact > 1:601796‑M1/1‑16 (MQ=255) gccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcgg < 1:199474‑M1/143‑132 (MQ=255) cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtgggtctctccggcagagtcttcaacgtattccagatcgcaaaccgcttcgccggtcacaattccgacacaaaccgcggcc > 2:426809‑M1/1‑10 (MQ=255) cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacacaaactgcggct > 2:498240‑M1/1‑10 (MQ=255) gccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggccatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaacagcttcgccgttcaccatcccgacagcaacggcggcta > 2:570865‑M1/1‑9 (MQ=255) ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgccagaaactgcggctac > 1:826776‑M1/1‑8 (MQ=255) tCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccat < 1:674245‑M1/143‑139 (MQ=255) | CCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGG > NC_000913/3815719‑3815995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |