Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 46 [0] [0] 46 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)41 (0.940) 36/262 0.2 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

CCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGG  >  NC_000913/3815719‑3815995
                                                                                                                                           |                                                                                                                                          
ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                        <  1:550678‑M1/143‑5 (MQ=255)
ccTGCTCGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGGCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                        <  1:543168‑M1/143‑5 (MQ=255)
 cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTCCCGACAAAAAACAGGCGACTCATCAGTCGCCTTAAAAATCACTTTGCCAGCGCCGCCCTCTGCcgtcc                                                                                                                                       >  1:647539‑M1/1‑138 (MQ=255)
  tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                      <  1:382153‑M1/143‑7 (MQ=255)
         tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGCCTCATCAGTCGCCTTAACAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcact                                                                                                                               >  1:16213‑M1/1‑130 (MQ=255)
                        tAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAACAAGGCGCCTCATCAGTCGCCTTAAAAATAAGTTTGCCAGCGCCGCCTTCTGCcgtcccccgcacttcaatgatccgcccg                                                                                                                >  2:815967‑M1/1‑115 (MQ=255)
                          aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTCTTCTACCGTCAGAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtc                                                                                                              <  1:692155‑M1/143‑31 (MQ=255)
                           aCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAACAAAAGGCGACTCATCCGTCGCCTTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactgcaatgatgcccccggcc                                                                                                             >  1:147472‑M1/1‑112 (MQ=255)
                             tGGCGCTGATATGGATTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTATGCAAGCGCCGCCTGCTGCcgacacctgcacttcaacgaacagcctgtcttc                                                                                                           >  2:549‑M1/1‑110 (MQ=255)
                                           tgtcgttccttcgctcCTCGTCTTACTTTTCTACAGACAAGAAAAAGCCGCCTCATCAGTCGCCTTAAATATCAGTGTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacct                                                                                             <  2:552784‑M1/136‑48 (MQ=255)
                                              cATGCCTTCGCTCCTCCTCTTACTTTTCTACAGACGAAAAAAAAGGCGGCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                           <  2:620299‑M1/143‑50 (MQ=255)
                                                 gCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTATGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctccggtgctcactacattactgt                                                                                       >  2:827950‑M1/1‑90 (MQ=255)
                                                    ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg                                                                                    >  1:458378‑M1/1‑87 (MQ=255)
                                                     tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                   <  1:493315‑M1/143‑58 (MQ=255)
                                                          cctcATCTTACTTTTCTACAGCCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtaccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctg                                                                              <  1:276512‑M1/143‑63 (MQ=255)
                                                            tcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcg                                                                            <  1:798741‑M1/143‑65 (MQ=255)
                                                             cATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg                                                                           >  1:504407‑M1/1‑78 (MQ=255)
                                                               tcgcactttTCCACAGCCAAAACAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTGCTGCcgtcccccgcacttcaatgatgcgcccgtcttcgggcatcactacgttcatgtcggtctctgcggca                                                                         <  1:676034‑M1/139‑68 (MQ=255)
                                                                 ttACCTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcgtcggtcatcactacgttcatgtcggtctctgcggcaga                                                                       <  1:9382‑M1/143‑70 (MQ=255)
                                                                    cgttgctaccgACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtc                                                                    <  1:791839‑M1/138‑73 (MQ=255)
                                                                      tttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                  <  1:53832‑M1/143‑75 (MQ=255)
                                                                          tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctccccccacgtccgtccccccgccagagtctccaac                                                              >  2:105665‑M1/1‑65 (MQ=255)
                                                                               aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatt                                                         <  1:580722‑M1/143‑84 (MQ=255)
                                                                               aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatccgcccgtcttcggtcatcactacgttcatgtcagccactacgccaaagaattaaacgtatt                                                         >  1:808786‑M1/1‑60 (MQ=255)
                                                                                  aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattac                                                       >  1:685463‑M1/1‑58 (MQ=255)
                                                                                  aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcac                                                                                                  >  2:739271‑M1/1‑58 (MQ=255)
                                                                                  aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcac                                                                                                  <  1:739271‑M1/100‑43 (MQ=255)
                                                                                    aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccag                                                     >  1:313662‑M1/1‑56 (MQ=255)
                                                                                    aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctccaacgtattccag                                                     >  1:473197‑M1/1‑56 (MQ=255)
                                                                                            cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaa                                             <  2:823077‑M1/143‑96 (MQ=255)
                                                                                                tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttgaacggattccagaccgcaaaccgc                                         >  2:398254‑M1/1‑44 (MQ=255)
                                                                                                  atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctg                                       >  2:67352‑M1/1‑42 (MQ=255)
                                                                                                   tcaggggcctgaaACATCAGTTTGCCAGCGCCGCCTTCGGCcgtccgctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttc                                      <  1:204898‑M1/137‑103 (MQ=255)
                                                                                                    caGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcg                                     >  1:558724‑M1/1‑40 (MQ=255)
                                                                                                          ccTTAAAAATCAGTTTGCCAGCACCGCCTTCTGCggtccccagcacggcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc                               <  1:305526‑M1/143‑110 (MQ=255)
                                                                                                                     cgtTTGCCAGCGCCGCCTTCTGCcgtcccgtgcacttcaatgacgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac                    <  2:647539‑M1/142‑121 (MQ=255)
                                                                                                                     cgtTTCCCATCGCCGCCTCCTGCcgtcccctgcacctcaagtatgcgcccgtcttcggtcatcactacgctcatgtcggtctctgccgcagagtcttcaacgtactccagatcgcaaaccgcttcgccgttcacaattccgac                    <  2:76311‑M1/142‑121 (MQ=255)
                                                                                                                      gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgaca                   <  2:132006‑M1/143‑122 (MQ=255)
                                                                                                                         tGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacacttccgacagaa                >  1:510283‑M1/1‑19 (MQ=255)
                                                                                                                            cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaact             >  1:601796‑M1/1‑16 (MQ=255)
                                                                                                                                gccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcgg         <  1:199474‑M1/143‑132 (MQ=255)
                                                                                                                                  cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtgggtctctccggcagagtcttcaacgtattccagatcgcaaaccgcttcgccggtcacaattccgacacaaaccgcggcc       >  2:426809‑M1/1‑10 (MQ=255)
                                                                                                                                  cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacacaaactgcggct       >  2:498240‑M1/1‑10 (MQ=255)
                                                                                                                                   gccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggccatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaacagcttcgccgttcaccatcccgacagcaacggcggcta      >  2:570865‑M1/1‑9 (MQ=255)
                                                                                                                                    ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgccagaaactgcggctac     >  1:826776‑M1/1‑8 (MQ=255)
                                                                                                                                       tCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccat  <  1:674245‑M1/143‑139 (MQ=255)
                                                                                                                                           |                                                                                                                                          
CCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGG  >  NC_000913/3815719‑3815995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.