New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3895232	46 (0.980)	3 (0.070)	3/258	6.8	6.9%	intergenic (+15/+39)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity, adenine:H+ symporter
	?	NC_000913	= 3895243	39 (0.900)					intergenic (+26/+28)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity, adenine:H+ symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCA  >  NC_000913/3895090‑3895371                                                                                                                                               |                                                                                                                                              gtATGGGCGGCGTGATTCAGAACAAAGGTGCTCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCa                                                                                                                                               <  1:623003/142‑1 (MQ=255)  tATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑g                                                                                                                                             <  1:678169/143‑1 (MQ=255)   aTGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGGCCGCATTTGGTGAGTTTACTCAGCGAGTGAAGATCTCAATCAAAACCCCGCGA‑ga                                                                                                                                            >  2:342955/1‑142 (MQ=255)   aTGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑Gc                                                                                                                                            >  1:471979/1‑143 (MQ=255)         ggcgTGATTCAAAACAAAGGTGATCCGCAAACCGGAGAAGTGATGGATCAGGGGACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATcat                                                                                                                                      <  1:746806/143‑1 (MQ=255)                ttCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCAGACCGGGCAAATGACCGCACTTGGGCAGCTCATTCAGCGCATAAAGATCTAAACAACACACCCGCCA‑CCACTcatccctgcc                                                                                                                               >  2:325547/1‑136 (MQ=255)                   aGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGGTCTACATAAACACCCCGCCA‑GCAATCATGCATGGCg‑gg                                                                                                                           >  1:305444/1‑143 (MQ=255)                   aGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCg‑gg                                                                                                                           <  1:141363/143‑1 (MQ=255)                    gAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACAACATGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGt                                                                                                                          >  1:824884/1‑143 (MQ=255)                     aaCAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGtt                                                                                                                         >  1:771006/1‑143 (MQ=255)                         aaGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTa                                                                                                                     <  1:497265/143‑1 (MQ=255)                          aGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATGAAAAACCCGCCA‑GCAATCATGCATGGCG‑GTTTTTTaa                                                                                                                    >  1:352988/1‑143 (MQ=255)                           gtcgATCCGCAAAGCGGAGAAGTGATTGATCAGGGTACGATGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAAc                                                                                                                   <  1:165895/140‑1 (MQ=255)                            ttGATCGGCCACCCGGAGGCGTCTTGGGTCAGGGTTGGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGTGTTTATTCAGCGAGTTTAGATGTAAATAAAAAACCCGCCATGCATGATTGC‑TGGCG‑GGttttttatt                                                                                                                  <  2:323351/143‑5 (MQ=16)                             tGATCGGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAGACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAAcgc                                                                                                                 <  2:824369/143‑1 (MQ=255)                               aTCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACgcgc                                                                                                               <  2:28668/143‑1 (MQ=255)                                     aaaCCGGAGGAGGGATTGATCAGGGGACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGa                                                                                                         <  2:26732/143‑1 (MQ=255)                                     aaaCCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGa                                                                                                         >  1:398179/1‑143 (MQ=255)                                         cGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCCATCATGCATGGCG‑GGTTTATAACGCGCTATCGAtttt                                                                                                     >  2:535674/1‑143 (MQ=255)                                           gagaAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCGATTGACCGCATACGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAGAACCCGCCA‑GCAATCACGCACGGCG‑GGGTTTTCACACGCTGTCGacgatag                                                                                                   >  2:242011/1‑137 (MQ=255)                                                gTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGc                                                                                              >  1:716400/1‑143 (MQ=255)                                                  gattgatCAGGGTACGCTGGACCACCTGACCGGGAAATTGACCGCATTAGCTAATTACACGTGTTTTTTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGt                                                                                            <  1:380954/143‑1 (MQ=255)                                                          aGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAg                                                                                    >  1:168174/1‑143 (MQ=255)                                                                cGCTGGACCACCTGACCGGGCAAGTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATc                                                                              <  1:60753/143‑1 (MQ=255)                                                                 gCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCt                                                                             <  1:284588/143‑1 (MQ=255)                                                                 gCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAACCt                                                                             >  1:481091/1‑143 (MQ=255)                                                                     gACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAg                                                                         <  2:606964/143‑1 (MQ=255)                                                                      accaccTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAgg                                                                        >  1:673644/1‑143 (MQ=255)                                                                                cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAACAGCCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAcagca                                                              <  1:126558/143‑1 (MQ=255)                                                                                  ggCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACagcagc                                                            >  1:244014/1‑143 (MQ=255)                                                                                  ggCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCAATTCTAGTCAGCGTCGATAAAGACAATCCTCCGGCTAAACagcagc                                                            >  2:133231/1‑143 (MQ=255)                                                                                  ggCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTGTAACGCGCTATCGATTTTAGTGAGCGTCGATACAGACAATCTTCAGGATagtccgctgc                                                            >  1:402751/1‑134 (MQ=255)                                                                                    cAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTAAAAGGACATTCGTGAGTAGTGAGCGTCGATAAAGACAAGCTTCAGGATAAACAGCAgcgc                                                          >  1:821215/1‑143 (MQ=255)                                                                                     aaTTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATCTTAGTGCGCGGCGATAAAGACAAGCTTCAGCCTACACAGCCGCGCa                                                         >  2:617571/1‑143 (MQ=255)                                                                                     aaTTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATCCATGGCA‑GGTCTTGAACGCGCTCTCAACTTTAATGCACGTCGATACAGACAACCTCCAGGCTAAACAGCGGAGCa                                                         >  2:197942/1‑143 (MQ=255)                                                                                          aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATATCCGTGAGCGTCGATAAAGACAATCTTCAGGCTCAACAGCAGCGCAACgat                                                    >  2:803405/1‑143 (MQ=255)                                                                                           ccGCATTCGGTGAATTTATTCACCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTATTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACgatg                                                   <  2:429522/143‑1 (MQ=255)                                                                                            cacATTTGGGGAGGTTAGTCAGCGAGTTAAGAGCTAAATAAAAACCCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACgatga                                                  <  2:70235/141‑1 (MQ=255)                                                                                              gaTTCGGTGAGTTTATTCAGCGAGTTATGGTCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGAtt                                                <  2:663783/142‑1 (MQ=255)                                                                                                tttGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCGCGGCATTCAACG‑GCGATCGCAAATAGATAACCAACACAGAGACAATCTTCACGGTAACCAGCAGCGCAACGATGATCAc                                              >  2:806462/1‑143 (MQ=255)                                                                                                         tttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATACAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACAGGCt                                     >  1:107698/1‑143 (MQ=255)                                                                                                         tttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCt                                     >  1:593857/1‑143 (MQ=255)                                                                                                         tttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGAAACGATGATTACGCACggggt                                     >  1:133004/1‑141 (MQ=255)                                                                                                                            ccTAAACAAAAACCCCGCCA‑GCAATCATGCATGGCC‑GGTTTTTAACGCGCTATCGACTTTAGTGAGCGTCGACAAAGACAATCTTCAGGATAAACAGCAGCGCAACGCTGATTACGCACGGGCTTAGATCTCGCAGACGTCCg                  <  1:527667/142‑1 (MQ=255)                                                                                                                                aataaaAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGAGCACGCAGAGGTCCGGGAc              >  1:241987/1‑143 (MQ=255)                                                                                                                                         cccGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtca     >  1:472573/1‑143 (MQ=255)                                                                                                                                          ccGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGAAAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGCGCTTACATAACGCACACGACCGCTAcacatgtgcac    >  2:130373/1‑133 (MQ=255)                                                                                                                                            gCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtcatca  >  2:774300/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                              TTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCA‑GCAATCATGCATGGCG‑GGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCA  >  NC_000913/3895090‑3895371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.