New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 59296	52 (1.100)	3 (0.070)	3/248	6.6	6.2%	intergenic (+17/+391)	yabP/rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
	?	NC_000913	= 59302	45 (1.080)					intergenic (+23/+385)	yabP/rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGC  >  NC_000913/59163‑59439                                                                                                                                             |                                                                                                                                          aataaAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTACTACTGAAGAAGTTGCTACTAAAAAAGAACTGCTGAACAAATTACTGACAACGCAAATATTGAATGAGCCAGAATAAGCTAAGGACGAAGGGGC‑TGGAACGcc                                                                                                                                        >  2:344344/1‑143 (MQ=255)  ataaAATCCCCCGCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATGGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGccc                                                                                                                                       <  2:143471/143‑1 (MQ=255)   taaAATCCCCCCCAAAAAAATTGGTACTAAAGGGGTGGCTAGTGAAGAGGTTGCTACTAAAAAAGTATTGCATAATTAATTACTGACGACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGcccc                                                                                                                                      <  2:671973/143‑1 (MQ=255)    aaaaTCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCt                                                                                                                                     >  1:159946/1‑143 (MQ=255)    aaaaTCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCt                                                                                                                                     >  1:296429/1‑143 (MQ=255)        tCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCaa                                                                                                                                 <  1:411868/143‑1 (MQ=255)             cccgcaccaaTCGATACTAAAGGATTTGCTACTGAAGAAGTTGCTACGAAAAAAGCACTGCTGAACAAATTACTGACACCGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTa                                                                                                                            <  1:197914/135‑1 (MQ=255)             cccAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCA‑GCCCCTTCAACCTTa                                                                                                                            <  1:158826/143‑1 (MQ=38)                              tAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGgatga                                                                                                           <  1:211340/143‑1 (MQ=255)                              tAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAAGTATTGAATGAGCCAGAATAAGCTGAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGGGGgatga                                                                                                           >  1:408025/1‑143 (MQ=255)                                      ttGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACaa                                                                                                   <  1:536783/143‑1 (MQ=255)                                        gCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAAtt                                                                                                 <  1:627069/143‑1 (MQ=255)                                          tACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACATTAGCAGTAGCGTGGGATGATTTCACAATTAg                                                                                               >  1:115820/1‑143 (MQ=255)                                           agtggagaagTTGCTCCAGAAGGAGTACGGGGGAACAAGTTACTGACAACGCAATTATTGAATGAGCCCGAATAGGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAGCCTTAGCAGTAGCGTGGGATGATTTCACAATTAGa                                                                                              <  2:4185/138‑1 (MQ=255)                                           aCTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGa                                                                                              <  1:542027/143‑1 (MQ=255)                                            cgtaagaagTTGCTACTAAAAAAGTACTGCTGGACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGaa                                                                                             <  1:342603/140‑1 (MQ=255)                                            cTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGATGGAGGGGC‑TGGAACGCCCCTTCAACCTTAGCCGTAGCGTGGGATGAATTCACAATTAGaa                                                                                             >  2:466722/1‑143 (MQ=255)                                               aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGCATGAGCCAGAATAATCTAAGGTGGAAGGGGC‑TGGAACGACCCTTCAACCTTAGCAGTAGCGAGGGAGGAGGTCACAATTAGAAAGa                                                                                          >  2:736947/1‑143 (MQ=255)                                               aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGa                                                                                          >  2:797329/1‑143 (MQ=255)                                               aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGa                                                                                          >  1:59111/1‑143 (MQ=255)                                               aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGGGGGATGATTTCACAATTAGaagca                                                                                          >  1:754914/1‑140 (MQ=255)                                               aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACAGAGAACGCAACAATCGAATGAGCCAGAATAAGCTAAGACTGAAGGGGC‑TGGAACGCCCCGTCAACATTAGCACTGGCGAGGGGTGACGTCACAATCAGAAAGa                                                                                          >  2:822787/1‑143 (MQ=255)                                                  aagTTTCTACGAAAAAAATACTGCTGAACAAATTACTGACAACGCAATTATTCAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCt                                                                                       <  2:250281/143‑1 (MQ=255)                                                  aagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCt                                                                                       <  1:151965/143‑1 (MQ=255)                                                    gtggcgactaAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCGAAGGTGGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGc                                                                                     <  2:105050/137‑1 (MQ=255)                                                     ttGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAAACTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCa                                                                                    <  2:36329/143‑1 (MQ=255)                                                            taAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAg                                                                             >  1:43763/1‑143 (MQ=255)                                                            taAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAACCAAAATAAGCTAAGGTAGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTGCACAATTAGAACGACCTGCATGATGAg                                                                             >  2:176925/1‑143 (MQ=255)                                                              aaaaaGTACTGCTGAACAAATCACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGATGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGGTGAGCt                                                                           >  2:23445/1‑143 (MQ=255)                                                                   gTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGATGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAgaga                                                                      >  2:569849/1‑143 (MQ=255)                                                                         ctgAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGGAGAGGc                                                                >  1:484960/1‑143 (MQ=255)                                                                         ctgAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGc                                                                >  2:702168/1‑143 (MQ=255)                                                                           gAACAAATTACTGACACCGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTa                                                              <  1:368975/143‑1 (MQ=255)                                                                            aaCAAATTACTGACAACGCAAGTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAg                                                             <  2:41275/143‑1 (MQ=255)                                                                              cAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTCGAGAAGAGGCTAGTg                                                           >  1:639989/1‑143 (MQ=255)                                                                                 aTTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACg                                                        >  1:739380/1‑143 (MQ=255)                                                                                  ttACTGACGACGCAATTATTGCATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGc                                                       <  1:342746/143‑1 (MQ=255)                                                                                       gACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTCGTGACGCAAGGc                                                  >  1:237271/1‑143 (MQ=255)                                                                                        aCAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcg                                                 >  1:483292/1‑143 (MQ=255)                                                                                        aCAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcg                                                 >  1:565985/1‑143 (MQ=255)                                                                                          aaCGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCGTCAACCGTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcgtc                                               <  2:181454/143‑1 (MQ=255)                                                                                            cGCAATTATTGAATGAGCCAGAATGAGCTAAGGTTGAAGGGGC‑TGGCACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGCTTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcgtcgt                                             <  1:23998/143‑1 (MQ=255)                                                                                            cGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGGCCTTGCAGCCTTAGCAGTAGCGTGGGATGATTTCACAGTTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCAAGTGACGCAAGGcggagt                                             >  1:827322/1‑139 (MQ=255)                                                                                               aaTGATTGAATGAGCCAGAATAAGCTAAGGTGGAAGGGGC‑TGGGACGCCCATTCAACGTGAGCAGTAGAGTGGGATGATTTCACAATTAGAAAGACCTGCAAGGTGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCa                                          <  2:15121/143‑1 (MQ=255)                                                                                                  tattGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGa                                       <  1:804594/143‑1 (MQ=255)                                                                                                       aaTGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACgg                                  >  1:513694/1‑143 (MQ=255)                                                                                                         tGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGAt                                <  1:182896/143‑1 (MQ=255)                                                                                                                              tGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCaa           <  2:549527/143‑1 (MQ=255)                                                                                                                                acgtgtc‑TGGACCGCCCCTTCAACCTTAGCAGCAGCGTGGGCTGATTTCACAATTAGAATGGCCTGCGTCATGAGCTAGAGAAGAGGCTAGTGACGCAATGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAAcc         <  1:516930/137‑1 (MQ=255)                                                                                                                                     gC‑TGGAGCGTCCCTTGAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACt    <  2:335491/143‑1 (MQ=255)                                                                                                                                     gC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACt    >  1:638159/1‑143 (MQ=255)                                                                                                                                        tGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGc  >  1:452231/1‑143 (MQ=255)                                                                                                                                        tGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGc  >  1:471223/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                          AATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGC‑TGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGC  >  NC_000913/59163‑59439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.