New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1979489 | 2 (0.040) | 63 (1.340) | 44/282 | 0.1 | 96.9% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system |
TCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGA > NC_000913/2289979‑2290253 | tctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGt > 2:66858/1‑143 (MQ=37) ttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAg > 2:596017/1‑143 (MQ=38) tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATCTCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGa > 1:549254/1‑143 (MQ=255) tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTAATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGa > 1:675952/1‑143 (MQ=255) cTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGaa > 1:266994/1‑143 (MQ=255) cTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCACGGACTTGTTCGCACCTTCCATAACGATGTCAccaccaaga > 2:421291/1‑140 (MQ=11) tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACGCTGTTCTATGGCCCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCATAAGCCTGTAGCCACCAGAAc > 2:499226/1‑143 (MQ=14) tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACACTGTAGCAACCAGAAc > 1:324523/1‑143 (MQ=255) cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTACAGATGACAAACATGATCTCATATCAGGGACTTGTTTGCACCTTCCGTAGCGCTGTAGCCACCAGacgcgctat > 2:436694/1‑135 (MQ=14) ctgctgAATGCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGa < 1:235677/143‑1 (MQ=255) tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGCATTGTTCGACCCTTCCATAACGCTGTAGCACCCACAACAGATATTGCGGaa > 2:385603/1‑143 (MQ=17) ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGCACAGATATTGCGGAACg > 1:704155/1‑143 (MQ=255) gTCGGCGAAGGTAAGCTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCGCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGaaa < 2:346384/143‑1 (MQ=255) gCGACGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACACACACGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGa < 1:431222/143‑1 (MQ=255) ttGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGAt > 1:557636/1‑143 (MQ=255) gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGTCTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATCTT‑AGTAGTGTACAATGAGATACAGAACCAGATTGATGCAtt > 1:344355/1‑143 (MQ=18) aCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATATAATATCAGGGACTTGTTCGCACCTTACATAACGCTGTAGCAACAAGAAAAGATATTGTGGAACG‑ACAAAGAGAAACAGAAAAAGATTGATGAATTg > 2:302202/1‑143 (MQ=21) tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATCGCGGAACG‑ACCCAGAGAAACAGAACCAGATTGATGCCTTgcg > 2:522143/1‑141 (MQ=255) tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATACTGCGGAACG‑ACCAAGAGAAAGCGAACCAGAGTGCTGCATCGAg > 2:51386/1‑143 (MQ=21) aggatgaCCCCTGTTCTATGGCTCCTGAGGATAAACTTGATCTCATAGCATGGACTTGTTCGCACCTTGCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCt < 2:285249/141‑1 (MQ=255) gatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACTCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCttt > 2:624542/1‑143 (MQ=255) atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTc < 2:824259/143‑1 (MQ=255) atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCCCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGCTATTGCGGAACG‑ACAAAGAGAAACAGAACCAGAATGATGCATTCAGGTTTc > 2:518786/1‑143 (MQ=25) gaCCCGGTCCTATTGCGCCAGCGGACAAACATGACGTCATATCAGGGACTTGTGCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATAGTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGAGGCATTGAGCTTTCATc < 2:692272/142‑1 (MQ=255) aaCCCTGTTCTATGGCTCCAGATGACAACCATGATCTCATATCAGGCACTTGCTCGCACCTTCCATAACGCTGTAGCCACCACAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATc < 1:719769/143‑1 (MQ=255) aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTGAtg > 2:49624/1‑142 (MQ=255) cccTGTTCTATGGCTCCAGATGACAAACATGCTCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGCGAAACCGAACCAGATTGACGCATTGAGCTTTCATCCt > 2:64784/1‑143 (MQ=255) ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTa > 1:138048/1‑143 (MQ=255) cTGTTCGATGGCTCNAGATGACAAACATGATCTCATATCAGGGACTTGGTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGNTATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTNTCATCCTAt < 1:713536/143‑1 (MQ=255) tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATg > 2:279935/1‑143 (MQ=255) tcgaTGGGTCCGGATGACAAACATGATCGCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGaaa < 2:141631/140‑1 (MQ=255) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCCGTAGTCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGaag > 1:101497/1‑142 (MQ=255) gcgctGGCTCCAGAGGACAAACATGATCTCATATCAGGGACTTGTTTGCACCGTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGTTTGATGCAGTGAGCTTTCATCCTATGaaa < 2:141289/139‑1 (MQ=38) gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACGAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaattaatt > 2:228947/1‑143 (MQ=255) tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATACCGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAGACAGAACCAGATTGATGCATTCACCTTTCATCCTATGAAAATAATTGc > 2:117367/1‑143 (MQ=38) aggtGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGt < 2:319426/140‑1 (MQ=255) aGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGACACGAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATGGATGCATTGAGCTTTCGTCCTATGGAATTAACTGcggc > 1:313754/1‑140 (MQ=37) aTGAAAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTa < 1:698/143‑1 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa > 1:288966/1‑143 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAACTTAATTGCTGTTAAAAGCATTgggg > 1:94961/1‑142 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGt > 2:222477/1‑143 (MQ=255) tctcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:686222/1‑143 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGa < 1:645296/143‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGaaaa > 1:572527/1‑143 (MQ=255) gtgACTTGTTTGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATAc < 2:555712/141‑1 (MQ=255) tGTTCGCACCTGCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACACAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCAtcg > 2:336574/1‑141 (MQ=255) gCACCTTGCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa < 1:119265/143‑1 (MQ=255) gCACCTTCCATAACGCTGTAGCCACCCCTACATGTTGGTCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa < 1:221288/143‑1 (MQ=255) gCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAACGCATTGGGTACAGAAAATACCCATAGCTCCa > 1:640752/1‑143 (MQ=255) gCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa > 2:787841/1‑143 (MQ=255) ccTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAACCATTGGGTGCAGACAAGACCCAtggacccttca > 1:598085/1‑133 (MQ=255) cATAGCGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGa < 1:66858/143‑1 (MQ=255) | TCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACG‑ACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGA > NC_000913/2289979‑2290253 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |