New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078053 (0.070)21 (0.550) 20/250 1.0 86.3% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 4 (0.100)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

AGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207669‑1207947
                                                                                                                                         |                                                                                                                                              
aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTCTGGGAGAAGGctctgc                                                                                                                                          >  2:618191‑M1/1‑137 (MQ=255)
 gttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa                                                                                                                                          <  2:654380‑M1/22‑1 (MQ=255)
  ttgttgagctgggttctggtcatttgttgatacgcgtacatagccaataagcgtgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                                         >  1:531716‑M1/121‑143 (MQ=255)
         tctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatctccatggtaaaagcaggaatgatgccatttgcttgttatttcttcatcttcataaacgTTGGTTTGGGAGAAGGAGCAAACCTCAATg                                                                                                                                  <  1:310386‑M1/30‑1 (MQ=255)
         tctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGGGAAGGCGCACAACTCAata                                                                                                                                  <  1:708585‑M1/30‑2 (MQ=255)
         aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAACACCTTGGTTTGGGAGAAGGctctgcattacctgt                                                                                                                                 >  2:30372‑M1/1‑128 (MQ=255)
         aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt                                                                                                                                 <  2:436807‑M1/143‑16 (MQ=255)
          ctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                                                 >  1:390453‑M1/113‑143 (MQ=255)
           ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGCTATCAAATCGGATGGCACCGTGCACACGGCCCTCGAAAACGGTGGCTTGGGAGAAGGctctgcattacctggtg                                                                                                                               >  1:657288‑M1/1‑126 (MQ=255)
            gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCGAATCGGATGGCAGTGTGCAAACGGCTCTCGAAAAACTTGGTTTGGGAGAAGGctctgcaatacaaggtga                                                                                                                              >  1:80405‑M1/1‑125 (MQ=255)
               ttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgGTGGTTTGGGAGAAGGAGCACAACTCAAtgcagcac                                                                                                                            <  1:428248‑M1/36‑2 (MQ=255)
                tctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc                                                                                                                           >  2:579286‑M1/107‑143 (MQ=255)
                 tcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg                                                                                                                         <  1:137205/142‑1 (MQ=255)
                 gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcc                                                                                                                         <  1:676285‑M1/143‑24 (MQ=255)
                   ggtcatttgttgatacgcgtacatagccaataagcctgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattctcataaccgTGGGTTTGGGAGCAGGAGCTaacctcaatgcggccacagc                                                                                                                        <  2:673057‑M1/40‑10 (MQ=255)
                   aCGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg                                                                                                                       >  1:667870‑M1/1‑118 (MQ=255)
                         ttgttgctacgcgtacatagccaataagcatgttacatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt                                                                                                                  >  1:521828‑M1/98‑143 (MQ=255)
                         gtggagatacgcgtacatagccaataagcatgttaaagcctcctggtagaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt                                                                                                                  >  1:659148‑M1/98‑143 (MQ=255)
                          ggtactgaccgCACTCCGCGCTCGGCGGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCGCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt                                                                                                                <  1:44151‑M1/141‑33 (MQ=255)
                           tgacttaccgCACTGCGCGCGCTGGCGTTAGGCCGGAAGGAGCCGTTTGGCGATATCCAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg                                                                                                               <  2:315657‑M1/141‑34 (MQ=255)
                            ttgatacgcgtacatagccaatgagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                               >  1:82536‑M1/95‑143 (MQ=255)
                                    cgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGTAGGAGCAAAACTCAACGCAGCAACGGCTACGTTAAGACGcacga                                                                                                       <  1:20234‑M1/57‑3 (MQ=255)
                                    cgtacagagccaataagcatgttaaatccccctggtaagagcaggaatgatgccatttgcttgttatttcttcgttttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg                                                                                                       >  1:323462‑M1/87‑143 (MQ=255)
                                     gtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgcgatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGATACATTAGGACGCACCgg                                                                                                      <  1:763354‑M1/58‑1 (MQ=255)
                                       acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt                                                                                                    <  2:681005‑M1/60‑1 (MQ=255)
                                         tCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggagccctggccttcagccactc                                                                                                 >  1:566747‑M1/1‑96 (MQ=255)
                                            cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGGCGATGATTATCGTCGCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc                                                                                              <  2:173344‑M1/143‑51 (MQ=255)
                                                    tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGctctgcattacctgttggtgtcccggttctggggggtgcagacacaccgccaacaggc                                                                                      >  1:486195‑M1/1‑85 (MQ=255)
                                                       cgtttaatccccctggtagatgcaggcatgatgccagttgcttgttatttcttcattttcataaacgTTGGTTGGTGAGAAGGAGCAAATCTCAATGCAGCAACGGCTACATTAGGACGCCCCGGTTTCATAGCTATACCGGt                                                                                    >  1:629753‑M1/68‑143 (MQ=255)
                                                         ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATaccggcta                                                                                  <  2:18014‑M1/78‑4 (MQ=255)
                                                         ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGCAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                                  <  2:382382‑M1/78‑1 (MQ=255)
                                                             gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCCCTGTGCAAACGGCTCTCGAAAACCTCGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAGTCGGCCGCACCGGTGTCATAGCCATACCGGttgagctt                                                                             >  1:175786/1‑137 (MQ=25)
                                                             gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa                                                                             <  2:467852‑M1/143‑68 (MQ=255)
                                                             atccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt                                                                              <  2:700610‑M1/82‑1 (MQ=255)
                                                              ccacactcggtgtggcgatgtcaacTCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTCGGGAGAAGGctctgcattacctgttggtgtcgcggttccgtggccttcagccactccgccaacaggctggctgaaat                                                                            <  1:258299‑M1/131‑69 (MQ=255)
                                                                 ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattgtcataaacgTTTGTTTGGGAGAAGGAGCAAAACTCAATGCCGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                          >  2:209586‑M1/58‑143 (MQ=255)
                                                                  aaTCCGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaa                                                                        <  1:57704‑M1/143‑73 (MQ=255)
                                                                   ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtgg                                                                        <  2:441480‑M1/88‑1 (MQ=255)
                                                                       taaaagcaagaatgattccatttgcttgttatttcttcattttcatcaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                                    >  2:208982‑M1/52‑143 (MQ=255)
                                                                         aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTTGTATTGa                                                                  >  1:681005‑M1/50‑143 (MQ=255)
                                                                            gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAGGGCGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTTGGTGGTATTGAGCa                                                               <  2:92940‑M1/97‑1 (MQ=255)
                                                                              gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcttt                                                            <  2:220220‑M1/143‑85 (MQ=255)
                                                                                    aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgc                                                      >  2:461568‑M1/1‑53 (MQ=255)
                                                                                         catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                                  <  2:627175‑M1/110‑1 (MQ=255)
                                                                                                ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGgggg                                           <  1:670998‑M1/117‑1 (MQ=255)
                                                                                                   ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATCCAGtgggggg                                        <  2:334701‑M1/120‑2 (MQ=255)
                                                                                                     atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAATCAGTAATCATTCAGTGGGGGTgg                                      <  1:166827‑M1/122‑1 (MQ=255)
                                                                                                        tccttattttcataaatgTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAAt                                   >  1:109555‑M1/19‑143 (MQ=255)
                                                                                                          ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGc                                 <  2:758273‑M1/127‑1 (MQ=255)
                                                                                                             gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaa                              <  2:692739‑M1/143‑115 (MQ=255)
                                                                                                               tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagcatacccggaactggcaaagg                            >  2:391431‑M1/1‑27 (MQ=255)
                                                                                                               tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaagg                            <  2:667870‑M1/143‑117 (MQ=255)
                                                                                                                 tcttcaagtttaggttGGGTGAAGGAGCTAAACTTATTGCAGCTACGGCTACATTAGGACGCACCGGTTTGTTAGCTTTTCCGTTGATGATTGGTTGTATTGAGCAATCATTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                          <  1:292652/129‑1 (MQ=255)
                                                                                                                 tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgcaggatacccggaactggcaaaggct                          >  2:307084‑M1/1‑25 (MQ=255)
                                                                                                                   ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGCTATGATTGGTGGTATTCAACAATCAGTAGTCATTCAGTGGGGGTGGAATGCAGCACAaga                        <  1:205309‑M1/136‑2 (MQ=255)
                                                                                                                     aaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCCGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt                      <  2:664636‑M1/138‑1 (MQ=255)
                                                                                                                                 GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATCAACAGTTGCGTTGAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCGCTgggg          <  2:174055‑M1/143‑1 (MQ=255)
                                                                                                                                   gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattg        >  2:645548‑M1/1‑7 (MQ=255)
                                                                                                                                     gaAGGctctgcattccctcttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaatcaactgcc      <  1:710945‑M1/143‑139 (MQ=255)
                                                                                                                                         gctcggcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgat  <  1:645548‑M1/143‑143 (MQ=255)
                                                                                                                                         GAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGa  <  2:608167‑M1/143‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                              
AGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207669‑1207947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.