New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729462	32 (0.740)	3 (0.070)	3/266	6.3	9.8%	intergenic (‑20/+152)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
	?	NC_000913	4168348 =	25 (0.610)					intergenic (+149/‑23)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGC  >  NC_000913/2729323‑2729603                                                                                                                                            |                                                                                                                                               tttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGTAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGtt                                                                                                                                             <  2:369836/143‑1 (MQ=17) tgtGAGATATTGGGGGCGGCGACTGTCCCTCACAAGCCAGTAAGGGGCGTCCCCTAGGGGATTCGAACCCCTGTTAGCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGtt                                                                                                                                             <  1:581205/141‑1 (MQ=11)     agaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCCCTAGACGAACGGGACCCGAAAATTGCTTATCACGCGTTGCGt                                                                                                                                         >  2:366519/1‑143 (MQ=12)                     gattttCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAgg                                                                                                                        <  2:132026/140‑1 (MQ=1)                              tcgcaAACTAGCAAGTGGCGTCCCCTAGGGGACTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCttt                                                                                                               <  2:355662/140‑1 (MQ=0)                                        gCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGCCACGACAATTGCTTAT‑AAAAATAACAAGAAGTTTTCCGTGTAGGGTGAGCCTTCATTAGTAGa                                                                                                     >  1:738433/1‑143 (MQ=1)                                                                                 cggcaacgggCGGTGGCGTGGGCCTCTAGTCGAAGGCGGCACGATACTTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCCTTAATAGAAAGCGAACGGCCTTGTTCTCTTCAGCCTCACTCCCAAcgcg                                                            <  1:757251/136‑1 (MQ=1)                                                                                           cgttgtCCTGTGCCTCTAAACAAAGGGTACACGAAAATTTCTTATTACGCGTTTCCTGATATGTT‑CGTGTAGGGTGACCTTTCTTTACTAGAAAGCGAACTGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCtt                                                  <  2:103280/140‑1 (MQ=1)                                                                                                  gggggCGTGTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGCGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCATTATTCTCTTCAGCCTCACTCCCAACGCGTAACCGCCGTGCTAtcc                                           >  1:133290/3‑141 (MQ=11)                                                                                                  cTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTGTCTTCAGCCTCACTCCCACCGCGTAAACGCCTCGCTATTc                                           >  2:194064/1‑143 (MQ=12)                                                                                                  cTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc                                           >  2:740626/1‑143 (MQ=32)                                                                                                    gggCTTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc                                         <  1:173182/143‑1 (MQ=17)                                                                                                      gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt                                       <  1:610639/143‑1 (MQ=32)                                                                                                      gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt                                       <  1:57660/143‑1 (MQ=32)                                                                                                       ccTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt                                      >  2:214092/1‑143 (MQ=32)                                                                                                         tctAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTCATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc                                    >  2:309270/1‑143 (MQ=18)                                                                                                                gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTTATCCGag                             >  1:447045/1‑142 (MQ=17)                                                                                                                gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCCGaa                             >  2:275869/1‑142 (MQ=25)                                                                                                                gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGAc                             >  1:144688/1‑143 (MQ=37)                                                                                                                 aaGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACCCCTTGCTATTCACTTTTCATCAGACa                            >  1:246505/1‑143 (MQ=37)                                                                                                                   ggggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAAt                          <  2:505693/143‑1 (MQ=39)                                                                                                                       acacGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgt                      <  2:712531/143‑1 (MQ=39)                                                                                                                         acGAAAATTTCTGATCACGCGTTGCGTGAGATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACCGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt                    <  1:154942/143‑1 (MQ=255)                                                                                                                         acGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt                    >  2:40554/1‑143 (MQ=37)                                                                                                                           gAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACACTCTGTGTGa                  >  2:729342/1‑143 (MQ=255)                                                                                                                             aaaTTGCTTATCACGCGTTGCGTGATATCTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGc                <  2:435840/143‑1 (MQ=38)                                                                                                                                    ttATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCCGTGTGAGCACTGCaa         >  1:64234/1‑143 (MQ=255)                                                                                                                                    ttATCACGCGTTGCGTGATATTTT‑CGTGTAGGATGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATCCACTTTTCATCAGACAATCCGTGTGAGCACTGCaa         >  2:745767/1‑143 (MQ=255)                                                                                                                                     tATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCaaa        <  1:145826/143‑1 (MQ=255)                                                                                                                                        cACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTa     <  2:42387/143‑1 (MQ=255)                                                                                                                                           gcgTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGTCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGc  <  1:49201/143‑1 (MQ=255)                                                                                                                                           gcgTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGc  <  2:144688/143‑1 (MQ=40)                                                                                                                                            |                                                                                                                                               TTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTT‑CGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGC  >  NC_000913/2729323‑2729603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.