New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12994982 (0.050)46 (1.090) 37/274 0.1 96.9% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 1 (0.020)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

GCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGT  >  NC_000913/1300562‑1300840
                                                                                                                                        |                                                                                                                                              
agttagttataatgatttccttaacttcttctcctcaccatcatgttattgtcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataataa                                                                                                                                          <  1:299667‑M2/7‑1 (MQ=255)
agttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaatcattgaaatgatattattaattccactgcctttggtagaggaaagtcctaactaataa                                                                                                                                          >  2:674109‑M2/137‑143 (MQ=255)
  ttacctacaaggatttccctaactccgcctcctcaccatcatgttattatcgccccatcataaacctgggcttgctgacgaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATc                                                                                                                                        <  2:463341‑M2/9‑1 (MQ=255)
     gttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattacttccactgcctttgatagaggaaagtgctaaATAATAATCAAt                                                                                                                                     >  1:442505‑M2/132‑143 (MQ=255)
     gttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATcaac                                                                                                                                     >  1:607579‑M2/132‑142 (MQ=255)
            gaagaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGACATGACTGAGTGAGACGAGAAGAATTTCCCCGCCTATTCGCACCTTCCCTAaataaaaacacagacaggta                                                                                                                              >  1:80418/1‑131 (MQ=11)
              atttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatt                                                                                                                            <  1:675391‑M2/21‑1 (MQ=255)
               tttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatta                                                                                                                           >  2:50256‑M2/122‑143 (MQ=255)
                 tccttaactgcttctcctcaccatcatgttattttcgccacgtaattgtgctttgcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAattatt                                                                                                                         <  2:318769‑M2/24‑1 (MQ=255)
                        ctgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt                                                                                                                  >  1:680950‑M2/113‑143 (MQ=255)
                         tgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAttt                                                                                                                 <  2:730638‑M2/32‑1 (MQ=255)
                           cttctcctcaccctcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCa                                                                                                               <  2:17320‑M2/34‑1 (MQ=255)
                            ttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtaggggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCac                                                                                                              >  2:287144‑M2/109‑143 (MQ=255)
                                ccgcaccatcatgttattttcgccacatgataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                                                                                                          <  1:271084‑M2/39‑1 (MQ=255)
                                     ccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaagtccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACGGGAAc                                                                                                     <  1:632564‑M2/44‑1 (MQ=255)
                                           tgttagtgtcgccacttcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAAt                                                                                               <  1:731639‑M2/50‑1 (MQ=255)
                                                ttttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATaagta                                                                                          >  2:97314‑M2/89‑141 (MQ=255)
                                                  ttcgccacatcataatcctgggcttgctgaagaataattgaaatcatattattaattccactgcctttggtagaggaaactgctaaATAATAATCAATTGTTCAATGATTGTGAATTTCACTACTGAAACGTTAATCcgaaca                                                                                        >  1:525432‑M2/87‑141 (MQ=255)
                                                      ccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcatttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTATAATCAAAAAAGATa                                                                                    >  1:511126‑M2/83‑143 (MQ=255)
                                                        acatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGa                                                                                  >  2:189382‑M2/81‑143 (MQ=255)
                                                         catcataatcctgggcttgctgaagaataattgaaatgatattattaattcgactgcctttggtagaggaaagtgctgaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGAc                                                                                 <  1:391078‑M2/64‑1 (MQ=255)
                                                          atcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACa                                                                                >  2:287375‑M2/79‑143 (MQ=255)
                                                            cataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAACTTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATg                                                                              >  1:660553‑M2/77‑143 (MQ=255)
                                                            cataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATg                                                                              >  1:660557‑M2/77‑143 (MQ=255)
                                                             ataatcctgggcttgctgaagaataattgaaatgatattattacttccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGc                                                                             >  1:192797‑M2/76‑143 (MQ=255)
                                                             ataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctgaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAACGATAGACATGc                                                                             >  1:310492‑M2/76‑143 (MQ=255)
                                                             ataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACCGTCATCAGAAAAGATAGACATGc                                                                             <  1:419875‑M2/68‑1 (MQ=255)
                                                                atcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTa                                                                          <  1:290299‑M2/71‑1 (MQ=255)
                                                                                tgaataattggaatgatattatgaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATttga                                                          <  1:3669‑M2/87‑1 (MQ=255)
                                                                                   ataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATttgattg                                                       >  2:644971‑M2/54‑143 (MQ=255)
                                                                                       ttgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTCCTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCGCTATTTGattgaatt                                                   >  2:244332‑M2/50‑143 (MQ=255)
                                                                                       ttgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGattgaatt                                                   >  2:581915‑M2/50‑143 (MQ=255)
                                                                                       ttgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGattgaatt                                                   >  1:212545‑M2/50‑143 (MQ=255)
                                                                                       ttgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATCTGattgaatt                                                   >  1:214024‑M2/50‑143 (MQ=255)
                                                                                           aatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGaaa                                               >  1:684161‑M2/46‑143 (MQ=255)
                                                                                           aatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGaaa                                               >  1:290661‑M2/46‑143 (MQ=255)
                                                                                                 attattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCAATACTGGAACTGTAATCAGAAAAGATAACCATGCTTAGCCAATCTCTACTTGATTGAATTGAAAGAtatt                                         >  1:644466‑M2/40‑143 (MQ=255)
                                                                                                          tccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGc                                >  2:452770‑M2/31‑143 (MQ=255)
                                                                                                            cactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCAt                              >  1:197970‑M2/29‑143 (MQ=255)
                                                                                                                gcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGAt                          >  1:587700‑M2/25‑143 (MQ=255)
                                                                                                                 cctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATg                         >  2:152375‑M2/24‑143 (MQ=255)
                                                                                                                 cctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCAGGGATg                         >  2:463757‑M2/24‑143 (MQ=255)
                                                                                                                    ttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCaa                      <  2:151611‑M2/123‑1 (MQ=255)
                                                                                                                                 gtgctgaATAATAATCAATTGTTAAATGATGGGGCATTTCACTACTGGAACTGGAATCAGACAACATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTg         <  2:660553‑M2/136‑1 (MQ=255)
                                                                                                                                 gtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTg         <  2:660557‑M2/136‑1 (MQ=255)
                                                                                                                                  tgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCACGCTATAGATTCTGa        >  2:292948‑M2/7‑143 (MQ=255)
                                                                                                                                   gctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATAACTAATTGGTTTAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGAt       >  2:636735‑M2/6‑143 (MQ=255)
                                                                                                                                    ctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATa      >  1:96054‑M2/5‑143 (MQ=255)
                                                                                                                                     taaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATAc     >  2:197962‑M2/4‑143 (MQ=255)
                                                                                                                                      aaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACCAAAACTGTAATCAGAAAAGATAGACATGCTTAGCCAAACCCTAACCAATCGAATTAAAAGAAGTTTGTTAAGGCATGTATGCAAGCTATAGATTCTAATACg    >  1:707356‑M2/3‑143 (MQ=255)
                                                                                                                                        ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGt  >  1:283594/1‑143 (MQ=255)
                                                                                                                                        |                                                                                                                                              
GCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGT  >  NC_000913/1300562‑1300840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.