New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979489	1 (0.020)	64 (1.480)	43/282	0.0	98.5%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290111	NA (NA)					intergenic (‑32/+1)	insH1/yejO	IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCAT  >  NC_000913/2289972‑2290246                                                                                                                                            |                                                                                                                                        gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATa                                                                                                                                      >  2:552737/1‑143 (MQ=32)  aaaaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGCTCGCACCTTCCATag                                                                                                                                     >  1:607439/1‑142 (MQ=14)   aaaTCTCCTTTCTGGGCTGACGGCGCTTACTGCTGAATTTACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGACGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAAc                                                                                                                                    <  1:726528/143‑1 (MQ=255)    aaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACg                                                                                                                                   <  1:453861/143‑1 (MQ=34)      tctcTTTTCTGGTCTGACGGCGCTCACTGCTGAATTCACTGGCGGCGAAGGTATGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGGTCGCATATCAGGGACTTATTCGGACCTTCCATagggag                                                                                                                                 >  2:612793/1‑138 (MQ=11)         ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTACTGCCGTTACCAGTGCTAAAGAAGGCTATTTGATGCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTa                                                                                                                              <  2:759944/143‑1 (MQ=9)         ctTTTCTGGTCTGACGGCGCTTACTGCTGAACCCGCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTa                                                                                                                              <  2:315527/143‑1 (MQ=255)              cttgTCTGACGGCTCTTACTGCTGAATTCACCGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGccac                                                                                                                         <  2:496429/140‑1 (MQ=255)                ggTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTCGccaccc                                                                                                                       >  2:574966/1‑142 (MQ=255)                    tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAAc                                                                                                                   >  2:676507/1‑143 (MQ=255)                           gcTTACTGCTGACCTCACTCTCGGCGAAGGTAAGTTGATGGCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATAtt                                                                                                            <  2:255841/143‑1 (MQ=255)                                 tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGATCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCGCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGaa                                                                                                      >  1:586556/1‑143 (MQ=255)                                 tgctgAATTAACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACATTCCATAACGCTGTAGCCACCGAGACAGATAATGCGGaa                                                                                                      >  1:168347/1‑143 (MQ=17)                                    ggaatgcccggTCGGCTAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAACCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGa                                                                                                   <  1:761750/133‑1 (MQ=18)                                        tgcACTGTCCACGAAGGCAACTTGAAGACTCACGATGAACCCGCTTCTATGGCTCCAGATGCCAAACATGAGCTCATAGCAGGGACTGGTTCGCACCTTCCATATCGCTGTAGCTACCATAACAGATATTGCGGAACGACaaa                                                                                               <  2:258663/141‑1 (MQ=255)                                          gaCTGTCGGCGAAGGTAAGCGGATGACGCATGATGAACCCTGTGCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGGGCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAaga                                                                                             <  1:345345/142‑1 (MQ=18)                                             tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaa                                                                                          >  2:367102/1‑143 (MQ=255)                                                      aGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGAAGTGGCTATACGCTTTGAGGTGGCGGAACGACAAAGAGAAACAGAACCa                                                                                 <  2:725174/143‑1 (MQ=14)                                                          aaGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGAtt                                                                             <  2:644866/143‑1 (MQ=255)                                                          aaGTTGATGACGCATGATGAACCCTGTTCGATGTCTCCAGATGACAAACATGGTCTCAGATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGAtt                                                                             <  1:476774/143‑1 (MQ=25)                                                             ttGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCGTATCAGGGACTTGTTCGCACCTGCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAt                                                                          <  1:688093/143‑1 (MQ=255)                                                                       atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCAACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCt                                                                >  1:475604/1‑143 (MQ=255)                                                                         gacgaACCCTGTTCTATGGCCCCAGATGACAAACATGATCGCATATCAGGGACTTGTTCGCACCGTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCttt                                                              <  2:651950/140‑1 (MQ=255)                                                                            gaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACAATGTAGCCACCAGAACAGCTATTGCGGAACCACAAAGAGAAACAAAACCAGAGACATGCACTAAGCTGTCAt                                                           >  1:270445/1‑143 (MQ=21)                                                                             aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATc                                                          <  1:676507/143‑1 (MQ=255)                                                                                 cTGTTCTATTGGTCCAGATGACAAACCTGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGGCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTAt                                                      <  1:653933/143‑1 (MQ=255)                                                                                 cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTAt                                                      >  2:178631/1‑143 (MQ=255)                                                                                     tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGaaa                                                  <  2:482124/143‑1 (MQ=255)                                                                                      cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaat                                                 >  2:320865/1‑143 (MQ=255)                                                                                           gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaattaatt                                            >  2:123302/1‑143 (MQ=255)                                                                                               cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTg                                        <  2:37408/143‑1 (MQ=255)                                                                                                aGATGACAAACATGATCTCATATCAGGAACTTGTTATGATCTTTCATAACGCTGTAGCCACCAGAACAGATATTGCAGAACGTCAAGGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCGATGAAATTAATAGCTGt                                       >  1:306495/1‑143 (MQ=255)                                                                                                 gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGtt                                      >  2:463047/1‑143 (MQ=255)                                                                                                       aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTACATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACAAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaacg                                >  1:751580/1‑141 (MQ=255)                                                                                                            tGATCTCATATCAGGGACATGTAAGCACGTTCCATAACGCTGTCGCCACCAGAACAGATATTGCGGAACGACAAATAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg                           <  2:103608/143‑1 (MQ=255)                                                                                                                 tcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGACCGACAAAGAGAAACAGAACCAGATTGATGCATCGAGCTTTCATCCTATGAAATTAATTGCTCTTCAACGCATTGCGcaca                      >  1:329561/1‑143 (MQ=255)                                                                                                                  cATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAg                     >  1:529183/1‑143 (MQ=255)                                                                                                                        aGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATa               >  2:102769/1‑143 (MQ=255)                                                                                                                            aCTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCa           <  2:459385/143‑1 (MQ=255)                                                                                                                                  tCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTc     <  2:529183/143‑1 (MQ=255)                                                                                                                                   cGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTcc    <  1:474262/143‑1 (MQ=255)                                                                                                                                   cGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACAAGATTCCTGCAGTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTcc    >  2:248451/1‑143 (MQ=255)                                                                                                                                     cACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACTCATAGCTCCAt  >  2:483764/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                        GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCAT  >  NC_000913/2289972‑2290246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.