New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4542683 =	34 (0.790)	3 (0.070)	3/264	6.3	7.2%	intergenic (+49/‑433)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913	4542997 =	46 (1.130)					intergenic (+363/‑119)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAAT  >  NC_000913/4542859‑4543138                                                                                                                                           |                                                                                                                                              tCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt                                                                                                                                           <  2:496432/143‑1 (MQ=255)  ccTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt                                                                                                                                          <  2:675497/143‑1 (MQ=255)   cTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCCTTCCTCTATGAGTCAAAATGGCCCCAAAGGTTTc                                                                                                                                         >  1:627196/1‑143 (MQ=255)    tCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCa                                                                                                                                        <  1:292729/143‑1 (MQ=255)    tCATTCCTCTCGCCAAAAACCACCTCATGCAATATAAACCTCTATAAATACAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTACGACATGCTGTCCTCTATGAGCGAAAAGGGCCCAAAAAGtgtac                                                                                                                                        >  1:531219/1‑139 (MQ=255)       ttcttcTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCAtat                                                                                                                                     >  2:95603/1‑141 (MQ=255)           tctctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTCCCCCTAAGCACCAAAAGGGCCCCcaacgctccctctattg                                                                                                                                 >  2:236427/1‑129 (MQ=255)             tctcCAAAAACCACCTCATGCAATATAAACATCTAGAAAGAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg                                                                                                                               <  2:118600/143‑1 (MQ=255)                 cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaa                                                                                                                           >  2:612261/1‑143 (MQ=255)                 cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaa                                                                                                                           >  1:450084/1‑143 (MQ=255)                          ccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGCGTCAAAAAGGCCCCAACTGTTTCATCTTTAGCGGGaacagcgtgaa                                                                                                                  >  1:263462/1‑134 (MQ=255)                           cTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAg                                                                                                                 >  2:681940/1‑143 (MQ=255)                            ccctGCAACATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgt                                                                                                                <  2:461480/140‑1 (MQ=255)                               tGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt                                                                                                             >  2:612279/1‑143 (MQ=255)                               tGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGATTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCCGTGtt                                                                                                             >  1:253584/1‑143 (MQ=255)                                gCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAAAAACAAAATAAACTGAAAAACTTTGTCCGCGATGCATTCCTATATGAGTAAAAATGGCCCCAAATGTTACATATTTTAGCGGAAAAcaatgaactggtg                                                                                                            >  1:53284/1‑131 (MQ=255)                                 taaTATAAACAACTATAAGTAAAAATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTGCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg                                                                                                           <  1:509828/142‑1 (MQ=255)                                 cAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCACATGTTTCAAGTTTTGGGGGAAAACTGTGCAGTGTTgg                                                                                                           >  1:564994/1‑143 (MQ=255)                                 cAATATAAACAGTTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg                                                                                                           <  1:406464/143‑1 (MQ=255)                                      taAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCGCCAAATGTTTCATCTTTTGGGAGACAACTGTGCTGTGTTGGCAGtt                                                                                                      >  1:299463/1‑142 (MQ=255)                                      taAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc                                                                                                      >  2:607011/1‑143 (MQ=255)                                         aCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCAATGCTTTCCTCTATGTGTCAAAATGGCCCCAAATGTTGCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa                                                                                                   >  1:726504/1‑143 (MQ=255)                                               ataaataaAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                                                                             <  1:397098/143‑1 (MQ=255)                                                taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTGTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGttt                                                                                            <  1:332008/143‑1 (MQ=255)                                                   atacaGACAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTCCCTCGATGAGTCAACATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca                                                                                         <  2:245919/143‑1 (MQ=255)                                                     aaaGATAACAATAGAATATTAAGTCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTAGGAGTCAAAAGGGCCCCAAATGTTTCATCTTCTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa                                                                                       <  2:110756/143‑1 (MQ=255)                                                     aaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa                                                                                       <  2:224288/143‑1 (MQ=255)                                                              aaTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt                                                                              >  1:230869/1‑143 (MQ=255)                                                               aTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa                                                                             <  1:213504/143‑1 (MQ=255)                                                                tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAc                                                                            >  1:170894/1‑143 (MQ=255)                                                                   aaTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa                                                                         >  2:119945/1‑143 (MQ=255)                                                                        tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAc                                                                    >  2:18229/1‑143 (MQ=255)                                                                               acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGcccct                                                             >  2:691761/1‑141 (MQ=255)                                                                                 aaaTAAACCGAACAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGt                                                           <  2:320339/143‑1 (MQ=255)                                                                                          gAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAACTGTTTCATCTTTCGGTGGAAACCTGTGCCGTGTTGACCGTCAAACTCGTTTACACCACAATGTGTATAGAACGACTACCCCTGTCGATTTTGa                                                  >  2:39142/1‑143 (MQ=255)                                                                                                    gTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttttt                                        <  2:664164/143‑1 (MQ=255)                                                                                                    gTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttttt                                        <  2:656703/143‑1 (MQ=255)                                                                                                     tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGACATAGtttttt                                       >  2:476304/1‑143 (MQ=255)                                                                                                     tCCGCGATGCTTCCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttttt                                       <  1:352140/143‑1 (MQ=255)                                                                                                     tCCGCGATGCTGTCCTCTATGAGTCAAAAGGGCCCCAAATGCTTCATCTTTTGGGGGAAAACGGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGACCGACTGCCCATGTCGATTTAGAAATAGtttttt                                       <  2:153774/143‑1 (MQ=255)                                                                                                          gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAGATACGTGTACAGAACGCATGCACATGTCGCTTTAGAAATAGTATCTTgaaag                                  >  1:187033/1‑143 (MQ=255)                                                                                                                     ctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGATTACAAAACAAGGTGTACAGACCGACTGCCCCTGTCGCTTTAGCAATAGTTTTGTGAAAGGAACGCAGCAt                       >  1:103985/1‑143 (MQ=255)                                                                                                                          aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACACAACAAAGTGTTCAGAACCACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGaaaa                  >  1:265844/1‑143 (MQ=255)                                                                                                                              aaaaTGGCCCCAAATGTTTCATCTTGTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaa              <  1:95603/143‑1 (MQ=255)                                                                                                                               aaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaa             <  1:119945/143‑1 (MQ=255)                                                                                                                                taTGGCCCGAAATGTTTCATCTTTTGGGGGAAAACTTTGCGGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGACCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaaa            <  1:250274/142‑1 (MQ=255)                                                                                                                                   ggCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACAGCCCATGTCGATTTAGAAATAGTTTTTTGCAAGGAAAGCAGCATGAAAATTAAAAcac         >  1:736236/1‑141 (MQ=255)                                                                                                                                     ccccAAATGTTTCATGTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTg       <  2:545127/143‑1 (MQ=255)                                                                                                                                      gccAAAGGTTTACTCGTTTGGGGGAAAACTGTGCTGTGTTGGCATTTCAACTCGTGTACAACACAAAGTGTACAGCACGTCTGGCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTgg      <  1:499976/142‑1 (MQ=255)                                                                                                                                          aaTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAAt  <  2:763493/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                              TCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAAT  >  NC_000913/4542859‑4543138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.