Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 33 [0] [0] 33 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)32 (0.800) 26/262 0.5 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815798‑3816079
                                                                                                                                              |                                                                                                                                           
acccctgcttgctaagcgcaaattcaataacctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagaccaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                                                             <  2:569650‑M2/1‑1 (MQ=255)
acacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                                                             >  2:598720‑M2/143‑143 (MQ=255)
        ttgctaagcgcaaagtcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                     <  1:553095‑M2/9‑1 (MQ=255)
        ttgcaaagcgcaaattcaagaaactggcgctgatatggtgtcatgccttcgctcctcatcttacttttcgacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                     <  1:553754‑M2/9‑1 (MQ=255)
                 gcaaattcaataaactggcgctgatatggtttcatgcattcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaacatcagtttgccagcgccgccgtctgcTGTCCCATGCACTccact                                                                                                                            >  2:121492‑M2/126‑141 (MQ=255)
                      ttcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                       <  1:194708‑M2/23‑1 (MQ=255)
                       tgaatagactggcgcttatgtgtgttcaggccttggctcctcgtcttatttttctacagacaaaaaaagggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttcttcCGTCCCCTGCACTTCAATGATgcg                                                                                                                      <  1:644860‑M2/24‑1 (MQ=255)
                       tcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCCATGCTgcg                                                                                                                      >  2:437658‑M2/120‑143 (MQ=255)
                                           tggttccatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTa                                                                                                  <  1:389071‑M2/44‑1 (MQ=255)
                                                 catgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaactcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCa                                                                                            <  1:70343‑M2/50‑1 (MQ=255)
                                                  atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGCCATCACTACGATCAt                                                                                           >  1:605846‑M2/93‑143 (MQ=255)
                                                    gccttcgctcctcatctgacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGt                                                                                         <  2:513691‑M2/53‑1 (MQ=255)
                                                            tcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGggctcg                                                                                 >  2:21916‑M2/83‑142 (MQ=255)
                                                            tcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagagccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTctct                                                                                 >  1:413343‑M2/83‑143 (MQ=255)
                                                                 atcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                                                            <  1:513898‑M2/66‑1 (MQ=255)
                                                                  tcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                           >  2:298160‑M2/77‑143 (MQ=255)
                                                                        ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                     >  2:743390‑M2/71‑143 (MQ=255)
                                                                            cgacagacaaaagaaaggcgacgcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa                                                                 <  2:119552‑M2/77‑1 (MQ=255)
                                                                             tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                >  2:393227‑M2/66‑143 (MQ=255)
                                                                             tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgacgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                >  2:396771‑M2/66‑143 (MQ=255)
                                                                             tacagacaaaaaaaaggagactcatcattcgccttcacgtttgtcgcgccagcgccgccttctgcCGTCCCCTGTACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                <  2:551047‑M2/78‑1 (MQ=255)
                                                                                  acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                                                           >  2:594991‑M2/61‑143 (MQ=255)
                                                                                       aaaaaggcgactcatcagtcgccttaaaactcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATGTCGGGCtctgcggcagagacttagtcgagtggcaga                                                      >  2:731253‑M2/56‑129 (MQ=255)
                                                                                                  tcatcagtcgccctaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCACCGTGATCCATGTGGCAaaccac                                           >  1:306942‑M2/45‑141 (MQ=255)
                                                                                                    atcagtcgccttaaaactcagtctgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCtt                                         <  1:584115‑M2/101‑1 (MQ=255)
                                                                                                      cggtcgcgttaaaagtcagttggccagcgccgccttctgcCGTCCCCTGCACTGCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCg                                       <  1:301278‑M2/103‑1 (MQ=255)
                                                                                                           gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGtt                                  <  2:532837‑M2/108‑1 (MQ=255)
                                                                                                             cttaacaagccctttgccagcgccgcctccttcCCTCCCCTTCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATCTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTca                                <  1:637715‑M2/110‑1 (MQ=255)
                                                                                                             cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGTGTATTCAACGTATTCCAGATCGCACACCGCTTCGCCGTAca                                >  2:64048‑M2/34‑143 (MQ=255)
                                                                                                                           tgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGTAAACCGCTTCGTCGTTCACAATTCCGACAGaa                  <  1:396771‑M2/124‑1 (MQ=255)
                                                                                                                           tgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGaa                  <  1:393227‑M2/124‑1 (MQ=255)
                                                                                                                             ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAGTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCgacagcacc                >  2:181130‑M2/18‑139 (MQ=255)
                                                                                                                                           tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTGCATGTCGGTCGCTGCGGCAGCGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACACTTCCGACAGACACTGCGcctcccctcc  >  2:94909‑M2/4‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                           
ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815798‑3816079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: