New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 354697	45 (1.070)	3 (0.080)	3/268	6.1	6.6%	noncoding (99/171 nt)	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences
	?	NC_000913	= 354713	42 (1.050)					noncoding (115/171 nt)	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCC  >  NC_000913/354558‑354838                                                                                                                                             |                                                                                                                                              cgtTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAg                                                                                                                                            <  2:70866/143‑1 (MQ=255)     ggATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTCGGTCGGATAAGgcgc                                                                                                                                        >  2:479573/1‑143 (MQ=255)      gATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGGAGGTCGGATAAGGCGCt                                                                                                                                       >  2:98861/1‑143 (MQ=255)        tCAGATCCGCCAGGCGATGGAAGAGTATGTAATTGTCGGGTGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcg                                                                                                                                     >  2:462077/1‑143 (MQ=255)        tCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcg                                                                                                                                     <  1:464035/143‑1 (MQ=255)            aTCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGGC‑GATGCCTGATGCGACGCTGACGCGTGTTATCATGCCTGCGGACCTGAACCGTAGGTCGGGTGAGGCGCTggcggc                                                                                                                                 >  1:292811/1‑141 (MQ=39)                gCCAGGCGAGGGAGGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGGACCGTAGGTCGGATAAGGCGCTCGCGTCGCAt                                                                                                                             <  1:444499/143‑1 (MQ=255)                            aaGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGc                                                                                                                 >  1:467265/1‑143 (MQ=255)                               agTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGCTTTATCATGCCTACGGACCTGAACCGTAGGTCGGCTAAGGCGGCGGCGTCGCATCCGACACCATGcccc                                                                                                              >  1:645089/1‑140 (MQ=38)                                 taggcatttGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGTCGCGGTGTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGa                                                                                                            <  2:168281/136‑1 (MQ=39)                                                     cgcgcgGTGCAGCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcg                                                                                        <  2:490490/143‑1 (MQ=255)                                                             gcgtCCGGCTCTGTGTGCC‑GATGCCTCATGCGACGCGGACGCGTTTTAGCGTGCCTACCGACCGGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTAt                                                                                <  1:79389/140‑1 (MQ=38)                                                              gcatcggcacacagtgCCGGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTAt                                                                                >  2:519254/14‑143 (MQ=38)                                                                tCCGGCACTGTGTGCC‑GGTGCCTGATGCGCCGCTGACGCGTTGTGGCATGCCTACGGACCTGAACCGTAGGTCGCATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAg                                                                             <  1:479214/143‑1 (MQ=38)                                                                tCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAccgggctcatcaa                                                                             >  1:605274/1‑131 (MQ=255)                                                                  cGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                           <  2:84932/143‑1 (MQ=255)                                                                  cGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                           <  2:148618/143‑1 (MQ=255)                                                                  cGGCACTGTGTGCC‑GAGGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                           <  1:585906/143‑1 (MQ=255)                                                                     cacggggtgCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                                                        <  2:550824/137‑1 (MQ=255)                                                                               c‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATGCGACACCATGCTCAGATGCCTGATGCGACGCTGGCGCGTCTTCTCCCGCCCACCCACTGttt                                                              >  2:365541/1‑143 (MQ=39)                                                                                      cTGGTGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                        <  2:287986/143‑1 (MQ=255)                                                                                      cTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACCCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                        <  2:185861/143‑1 (MQ=255)                                                                                       tGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACAcc                                                       >  2:230067/1‑143 (MQ=255)                                                                                            cGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCGGATGCCTGGTGCGACGCTGACGCGTCTTATCAGGCGTGCCCACTGtgttgtgaccggtaa                                                  >  2:57058/1‑132 (MQ=38)                                                                                             gACGCTGACGCGTTTTATCATGCCNACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCNGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCANGCCTACCCACTGTTTTTACACCGACAAt                                                 >  2:48094/1‑143 (MQ=255)                                                                                              aCGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCCTCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAtt                                                >  2:606220/1‑143 (MQ=255)                                                                                                 cTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAttttt                                             <  2:97767/143‑1 (MQ=255)                                                                                                   gtcgcttgcgaTCATGCCTACGGACCTGAACCGTACGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTcc                                           <  2:365289/133‑1 (MQ=255)                                                                                                      gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCCTGCTCAGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACCCACTGTTTTTACACCCATAATTTTTccccc                                        >  2:37370/1‑143 (MQ=255)                                                                                                           ttctCATTCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCtt                                   <  2:730267/140‑1 (MQ=255)                                                                                                               cATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTg                               <  2:391883/143‑1 (MQ=255)                                                                                                                aTGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGGTTTGACACGGATCATTTTTCCCCCACCCTTTGGc                              >  1:374406/1‑143 (MQ=38)                                                                                                                  gCCTCCGGCCCTGGCCCGTAGGTCGGATCAGGCGCTCGCGTCGCATCCGACACCACGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCAc                            <  2:253238/143‑1 (MQ=38)                                                                                                                   ccTGCGGACCTGAACCGTAGGGCGGATAAGGCGCGCGCGGCGCAGCCGACACCAGGCTCAGATGCCTGATGCGGCGCTGACGCGTCTGATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACt                           <  1:10719/143‑1 (MQ=255)                                                                                                                   ccTACGGACCTGACGCGTAGGTCGGGTACGGCGCTCGCGTCGCATCCGACACCCTGCTCAGATGTCTGGTGCGACTCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTCCACCTATAATTTTTCCCCCACCTTTTTGCACt                           <  1:538621/143‑1 (MQ=37)                                                                                                                    cTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtc                          >  2:184642/1‑143 (MQ=255)                                                                                                                     tACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGGACtca                         >  1:416871/1‑143 (MQ=255)                                                                                                                     tACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcc                         >  2:670362/1‑142 (MQ=255)                                                                                                                      aCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCGGACACCAGGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcat                        <  1:674205/143‑1 (MQ=255)                                                                                                                        ggACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCACACCTTTTTTCACtcattc                      >  2:452362/1‑143 (MQ=255)                                                                                                                            cTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCatat                  >  2:730410/1‑143 (MQ=255)                                                                                                                            cTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCAGGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCCGGCCTACCCACTGTTTTTACACCGGTAATTCGTCCCCCACCTTTTTGCACtcccccatat                  >  2:368695/1‑135 (MQ=37)                                                                                                                                       gTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATACTTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAatatat       >  1:693633/1‑143 (MQ=255)                                                                                                                                           gATAAGGCGCTCGCGTCGCATCCGTGACCGTGCTTAGGTGGCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTcc   >  1:89732/1‑143 (MQ=39)                                                                                                                                            aTAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACGCCTTCCTATAAAAAATATATTTccc  >  2:630927/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                              CGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCC  >  NC_000913/354558‑354838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.