New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1726509	28 (0.670)	3 (0.070)	3/272	6.2	9.7%	coding (487/600 nt)	nemR	transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated
	?	NC_000913	= 1726514	29 (0.720)					coding (492/600 nt)	nemR	transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCACCAGAC  >  NC_000913/1726381‑1726644                                                                                                                                 |                                                                                                                                        aagaTATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTgg                                                                                                                           <  2:86650/143‑1 (MQ=255)     tatGCGCAGCGCGATGGATAAAGGGGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTg                                                                                                                       <  2:708408/143‑1 (MQ=255)      atGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTCCTTGACGCGCttgggactag                                                                                                                      >  1:624672/1‑134 (MQ=255)       tGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACCAGTGCTTTACGCACTGTGGCTCGgc                                                                                                                     >  1:105331/1‑143 (MQ=255)                  aTGGATACATGTGCTCGCGGCGTGCTCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGACCCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCa                                                                                                          <  1:178307/143‑1 (MQ=255)                   tGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTATCCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAg                                                                                                         <  1:104404/143‑1 (MQ=255)                   tGGATAAAGGTGCGCGCGGCGTGATCGCCCTGCTCTCTCAGGCGGTGGAAAATGGCCGTGAGAACCATTGGTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAg                                                                                                         <  1:620486/143‑1 (MQ=255)                       tAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCTCTGTGGCTTGGCGCGAATCTGCAGGCCa                                                                                                     >  2:494196/1‑143 (MQ=255)                          aGGTGCTCGCGGCGGGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCaaaa                                                                                                  <  2:282339/143‑1 (MQ=255)                               cTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGCAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTcg                                                                                             <  1:649782/143‑1 (MQ=255)                                 cgcgGCGTGATCGCCATGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAAACGGCAGGCCAAACATTcgcg                                                                                           >  1:104700/1‑143 (MQ=255)                                                     ctctcAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCTCTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGaaa                                                                       <  2:399668/143‑1 (MQ=255)                                                      tctcAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGaaag                                                                      >  1:377151/1‑142 (MQ=255)                                                            gcgcTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCCCAGCTTCGAGCCACTGGCAAACGCGCt                                                                >  1:447741/1‑143 (MQ=255)                                                               cTGGAGAAGGGCCGTGAGAACCATTGTTTAGCCTTGTGTGGCGAACCGCGGCACCAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGc                                                             <  1:729967/143‑1 (MQ=255)                                                                              gagaACGAGTGTTTGACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTGTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACat                                              <  2:602375/143‑1 (MQ=255)                                                                              gagaACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACat                                              >  1:382526/1‑143 (MQ=255)                                                                                    cATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGc                                        <  2:19894/143‑1 (MQ=255)                                                                                                ttttGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAACACGGTTTTGCGCCGTCTGCCgc                            >  2:161555/1‑142 (MQ=255)                                                                                                 tttGTGGCTGACCGCTGCACCAGCCACAAGTGCTTTACGCACTCTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAACACGAGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGtt                           <  1:335813/143‑1 (MQ=255)                                                                                                           aCCGCTGCAACAGGCACCAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTCCGACTCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGctaaacggcaggcgt                 <  2:657423/143‑15 (MQ=255)                                                                                                               cTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGGTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACAAGAGTGCGACGCCTGCCGGTTAGCAGGCagtggt             >  2:226901/1‑138 (MQ=255)                                                                                                                 gCACCAGTCACAATTGCTTTACGCACTGTTGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTa           <  2:45212/143‑1 (MQ=255)                                                                                                                  cAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTAt          <  2:660360/143‑1 (MQ=255)                                                                                                                   aaCAGGCACAAGGGCTTTACGCCCTGGGGCTTGCCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATc         <  1:368102/143‑1 (MQ=255)                                                                                                                     cAGGCACAAGGGCTTTACGCACTGTGGCGTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCAc       <  2:240498/143‑1 (MQ=255)                                                                                                                         cacaAGTGCTTTACGCACTGTGGCTTGGCGCGAATCCGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCACCAga   >  2:471481/1‑143 (MQ=255)                                                                                                                          acaATTGCTTTACGCACTGTGGCTCGGCGCGAACCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCACCAgac  <  2:585898/143‑1 (MQ=255)                                                                                                                          acaAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGGTTAGCAGGCATTTGTTATGACCAgac  >  2:549424/1‑143 (MQ=255)                                                                                                                                 |                                                                                                                                        AAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCACCAGAC  >  NC_000913/1726381‑1726644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.