New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1179565 =	47 (1.120)	3 (0.070)	3/270	6.1	6.6%	intergenic (+61/‑66)	nagK/cobB	N‑acetyl‑D‑glucosamine kinase/deacetylase of acs and cheY, chemotaxis regulator
	?	NC_000913	1179588 =	40 (1.000)					intergenic (+84/‑43)	nagK/cobB	N‑acetyl‑D‑glucosamine kinase/deacetylase of acs and cheY, chemotaxis regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGCGCCGCAGATGGCCTGTGGGAAGAAC  >  NC_000913/1179449‑1179727                                                                                                                                            |                                                                                                                                            gcCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAAACGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGCTGGTTGCGGAAAAATACACGCCGCATGCGCGAGCGTTTCCgc                                                                                                                                          >  2:232162/1‑142 (MQ=255)   cACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCa                                                                                                                                        >  2:697047/1‑143 (MQ=255)   cACGGTGAGGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGCTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGACTGCGCGAGCGTTTGCGTCa                                                                                                                                        <  2:512351/143‑1 (MQ=255)              gggagggaTGCGTGGGGCGGCCTTCGTACATCTAACCGATTAAACAACAGAGGTGGCTCTGCTGTCGCTTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAATGCCGCCTGCGCGAGCGTTTGCGTCAGCGTAtttttt                                                                                                                             <  1:263468/143‑1 (MQ=255)               gggggaATGCGTGGTGCGGCCTTGGTACGTCTAGCCGATTGAACAGCGGAGGTTGCTATGGTGTGGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAATTAAACGCCGCATGCGCGAGCGTTTGCGTCAGCGTAttttttt                                                                                                                            <  2:596111/140‑1 (MQ=255)                            gtgCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAgtg                                                                                                               <  2:387388/143‑1 (MQ=255)                                 ttcTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGCGCGTGAGTGTCAGCGTATTTTTTTCAGCGACAAAggggtggc                                                                                                          >  1:710073/3‑141 (MQ=255)                                 gCCTTCCTACATCTAACCGATTACACAGCAGAGGTTGCTATGCGGTCGCGACGGGATCATAGGTTAAGGCGGTTTCGTAAAAATAAGCGCGGCCTGGCGGAGGGGTTGCGGCAGCGGTGTTTTTTGAGAGAGACGGTGGAGcc                                                                                                          >  1:238578/1‑143 (MQ=255)                                  tcTTCCTACATCTAACCGATTCAACAACAGAGGTTGCTATGCTTTCGCGTCGGGGCCATCGGTTCAGTCGTGTTCGTAGAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCg                                                                                                         <  1:33974/142‑1 (MQ=255)                                         aCATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGCTAAAGTGGGGCCGGGAGCaa                                                                                                  >  2:220219/1‑143 (MQ=255)                                           aTCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATg                                                                                                <  1:586064/143‑1 (MQ=255)                                                   gATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAAcc                                                                                        >  2:515018/1‑143 (MQ=255)                                                   gATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCCTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTAAGAGATAAAGTGGTGCCGGAAGCAAGGGTAAAAcc                                                                                        >  1:362750/1‑143 (MQ=255)                                                    aTTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATAGGTTAAGTCGTTTTCGTAAAAATAAACGCCGGCTGCGCGAGCGTTTGCGTGAGCGTATTTTTCTCAGAGATAAAGCGGGGCCGCAAACAATGaaaaaaaga                                                                                       >  1:24787/1‑140 (MQ=255)                                                    aTTAAACAACAGAGGTTGCTACGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCa                                                                                       >  1:28517/1‑143 (MQ=255)                                                     ttAAACAACAGAGGTGGCTATGCTGTCGCGTCGGGGTCAGCGGTTAAGTCGTTTTCGGAAAAATAAACGCGGCGTGCGCGAGCGTTGGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCaa                                                                                      <  1:238669/143‑1 (MQ=255)                                                       aaaCAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAaga                                                                                    <  2:387194/143‑1 (MQ=255)                                                        aaccacAGAGGTTGCTATGCTGTCACGGCGGGGGCATCTGTTAAGTCGTTTTCGTAAAAATGAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAACGGAAAAACCAagag                                                                                   >  2:681066/1‑143 (MQ=255)                                                          caacatctgTTGCTATGCTGTCGCGTCGGGGTCCTCTGTTAAGTCGTTTTCGGAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTa                                                                                 <  1:528269/135‑1 (MQ=255)                                                          caacaGAGGTTGCTATGCTGTCGCGTCGGGGTTATCGGTTAAGTCGTTTTCGTAAAAATACACGCCACCTGCGCGAGCGCTTGCGTCAGCGTATTTTTTTCAGCGATGACCTGGTCCCGGCAGCAATGGACGACCCCAGAGTa                                                                                 >  1:625978/1‑143 (MQ=255)                                                             ccgagGTCGTTATGCTGTCGCGTCGTGGTTATCGGTTAAGTCGTTTTCGTAACAATAAACGCCGTCTGCTCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTc                                                                              <  1:199630/141‑1 (MQ=255)                                                             caccggTTGCTTTGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTc                                                                              <  2:596116/139‑1 (MQ=255)                                                              agagGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCg                                                                             <  2:188999/143‑1 (MQ=255)                                                                     gCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAGCCAAGAGTACTCGTACTGAc                                                                      >  2:609870/1‑143 (MQ=255)                                                                      cTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACa                                                                     >  2:184862/1‑143 (MQ=255)                                                                       tATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATCAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAg                                                                    >  2:673608/1‑143 (MQ=255)                                                                         tGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGGCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAggg                                                                  <  2:331395/143‑1 (MQ=255)                                                                         tGCCGTCGCGGCGGGCTCATCGGTTAAGTCGTGTGCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCCGAGATAAAGTGGTGCCGGAAGCAATGGAAACACCCAGAGGTTGCGTACTGACAggg                                                                  <  1:261791/143‑1 (MQ=255)                                                                         ggCTGTGGCGGCGTGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGAGAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAggg                                                                  <  1:25176/142‑1 (MQ=255)                                                                            tGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCACTGGAAAAACCAAGAGTACTCGTACTGACAggggaa                                                               >  2:45759/1‑141 (MQ=255)                                                                                   gcgcggTCGTCGGTTAAGTCGTTTTCGGAAAAATAAACGCCGTCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTGAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAAttt                                                        <  1:649352/139‑1 (MQ=255)                                                                                                ttAAGTCGGTTTCGTAATAAGAGTGGCCGCCTGGGCGAGCGTTTGCGTCAGCGTAGTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAgg                                           <  1:194643/143‑1 (MQ=255)                                                                                                     tCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTc                                      >  2:92397/1‑143 (MQ=255)                                                                                                         tttCGGAAAAATATACGCCGCCTGCGCGAGCGGTTGCGTCAGCGTGTTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTAc                                  <  1:190075/143‑1 (MQ=255)                                                                                                             gTAAAAATAGACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGACGCACTGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCttt                              <  1:352779/143‑1 (MQ=255)                                                                                                             gTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTAGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATACGGTATGCGTACCctt                              >  1:464246/1‑143 (MQ=255)                                                                                                                  aaTAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGCTACAGTGGTGCCCGAAGCAATGGACACACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGCATCAGCTCTCCGTACCTTTCgcgc                         >  1:105053/1‑143 (MQ=255)                                                                                                                   aTAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGcgcc                        >  1:274346/1‑143 (MQ=255)                                                                                                                                gcgcGAGCGTTTGCGGCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGCGCCGCAGATGGCCtgt           <  1:311076/143‑1 (MQ=255)                                                                                                                                  gcgAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCTGAAGCAATGGAAAAACCAAGAGTCCTCGTACTGACAGGGGTAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGCGCCGCAGATGGCCTGTgg         <  2:185787/143‑1 (MQ=255)                                                                                                                                         tttGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGCGCCGCAGATGGCCTGTGGGAATAAc  >  1:39973/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                            GCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGCGCCGCAGATGGCCTGTGGGAAGAAC  >  NC_000913/1179449‑1179727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.