New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2560166 =	58 (1.380)	4 (0.100)	4/270	5.5	6.7%	intergenic (+102/‑89)	intZ/yffL	CPZ‑55 prophage, putative phage integrase/CPZ‑55 prophage, uncharacterized protein
	?	NC_000913	2560182 =	55 (1.370)					intergenic (+118/‑73)	intZ/yffL	CPZ‑55 prophage, putative phage integrase/CPZ‑55 prophage, uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAA  >  NC_000913/2560042‑2560324                                                                                                                                             |                                                                                                                                               gCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATATTGCATGTTGTATAAGTATTTGTTTTGTATGGTGTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCAGGATTCGTCCGGctgt                                                                                                                                              >  2:43682/1‑141 (MQ=255)    aTCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGcttttct                                                                                                                                           >  2:477906/1‑143 (MQ=255)     tCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAGGGATGTGTTTTGTGTGGTTTAACTATCACCTGAGAAGAAACCTGTATTCAATCTCCCTGCTTCGTCCGGctcttctt                                                                                                                                          >  1:346497/1‑143 (MQ=255)      ccTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGcttttcttt                                                                                                                                         <  2:416428/143‑1 (MQ=255)      actctAGGACCGGATTGGATAATTGAGCGGCTCTTTTGCACAGCGCGATTTTGCATGTTGTATAAGTATTTTTTTTGTGTGGTTTAACTATCACCTGATAAGATACCTGTATTCAAGTTGCCGGATTCGTCCGGcttttcttt                                                                                                                                         <  1:47493/142‑1 (MQ=255)        tctAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCttttt                                                                                                                                       <  2:106687/143‑1 (MQ=255)         caagcaCCGGAATTAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTc                                                                                                                                      <  2:100656/138‑1 (MQ=255)            gAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCt                                                                                                                                   >  2:372113/1‑143 (MQ=255)               ccGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAat                                                                                                                                >  1:607089/1‑143 (MQ=255)                  gaatgaatAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattat                                                                                                                             >  1:643059/1‑143 (MQ=255)                   aatgaatAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattatt                                                                                                                            <  2:708250/143‑1 (MQ=255)                           atTGAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattattccattatt                                                                                                                    <  1:365459/143‑1 (MQ=255)                                gCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTACttattgctgtattccact                                                                                                               >  1:40616/1‑141 (MQ=255)                                gCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAAt                                                                                                               >  2:330830/1‑143 (MQ=255)                                   gCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTaa                                                                                                            >  2:190827/1‑143 (MQ=255)                                    cTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAATTATTTGTTTTGTGTGGTTTCAGAACCACCTGATATGGTACCTTTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTTCTATTAAg                                                                                                           >  1:714953/1‑143 (MQ=255)                                    cTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAGGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCGATTATTCCAATTAAg                                                                                                           >  2:84646/1‑143 (MQ=255)                                      tttttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTg                                                                                                         <  2:563111/143‑1 (MQ=255)                                      tttttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTg                                                                                                         <  1:279198/143‑1 (MQ=255)                                       tcttGCAAAGCGCAATGTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTgg                                                                                                        <  2:39564/141‑1 (MQ=255)                                         ttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGaa                                                                                                      <  1:108040/143‑1 (MQ=255)                                          tGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAAt                                                                                                     >  1:613558/1‑143 (MQ=255)                                            cAAAGCGCAATTTTGCAATTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTAGTCCGGCTATTCTTCTTCGCTAATTATTCTATTATTCAACTAAATTGGAATaa                                                                                                   >  1:493569/1‑143 (MQ=255)                                             aaaGCGCAATTTTGCATTGTGTCTTTGTGTTCGTCCTGTGTGGGTTAACTATCACCGGATAAGAACCCTGTCTCCAATTGGCCGGACTCGTCCGGCTTCTCTTTTGCGCTAATTATTCCATTATTCCACTTAATTGGAATaat                                                                                                  <  1:6868/143‑2 (MQ=255)                                                 ctctatgttGCATTGTCTTTAAGTATTCGTTTTGTGTGGTTTAACTACCACCTGATAACAAACCTGTATTCAACTTGCCGGATCCGTCCTGCTTTTCTTTTTCGCTAATTATTCCATTATTCCCATTAAGGGGAATAAattat                                                                                              <  1:85777/136‑1 (MQ=255)                                                   cAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTc                                                                                            <  2:483187/143‑1 (MQ=255)                                                   cAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTc                                                                                            <  2:72806/143‑1 (MQ=255)                                                    aaTTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCa                                                                                           >  2:156685/1‑143 (MQ=255)                                                           cATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCaa                                                                                    <  1:420315/143‑1 (MQ=255)                                                            aTTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAg                                                                                   <  1:252681/143‑1 (MQ=255)                                                             ttttGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGa                                                                                  >  2:445164/1‑143 (MQ=255)                                                              tttGCATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGATACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGaa                                                                                 <  1:68772/143‑1 (MQ=255)                                                                         aTTTGTTTTGTGTGGTTTAACTATCCCCTGCTAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCAt                                                                      <  2:690525/143‑1 (MQ=255)                                                                             gttttgtGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGttt                                                                  >  2:431609/1‑143 (MQ=255)                                                                              ttttgtGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTNTTTCGCTAATTATTCCATTATTCCAATTANGTGGAATAAATTANTCAATATCAAGAACTTAAATCCATGTTTg                                                                 >  2:73465/1‑143 (MQ=255)                                                                                      ggTTTAACTATCACCTGATAAGAAACATGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGaaa                                                         <  2:427439/143‑1 (MQ=255)                                                                                       gTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGGCCGGCTTTTATTTTTCGCTAATTGTTCCATTATTCCAATTAAGTGGAATAGATGATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAg                                                        >  2:68221/1‑143 (MQ=255)                                                                                        tttAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAATAACTTAAATCCATGTTTGCAACGcaaaa                                                       >  1:447289/1‑141 (MQ=255)                                                                                        tttAACTATCACCTGATAAGAAACCTGTATCCAATTTGCCGGATTCGTCCGGCATTTCTTTTTCGATAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTGAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGa                                                       >  1:273375/1‑143 (MQ=255)                                                                                          tAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATc                                                     <  2:295395/143‑1 (MQ=255)                                                                                              tATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTTGAATAACTTATTCAATCTCAAGAACTTAAATCCATGTTTGCAACGAAATATCCaga                                                 >  1:584477/1‑143 (MQ=255)                                                                                              tATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCaga                                                 >  2:204634/1‑143 (MQ=255)                                                                                               aTCACCTCATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCagag                                                <  2:395722/143‑1 (MQ=255)                                                                                                 cACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGtt                                              <  2:145182/143‑1 (MQ=255)                                                                                                      gATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGaaa                                         >  2:325958/1‑143 (MQ=255)                                                                                                          aGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAACTGGACTAACTTATTCAATATCAATAACTTCAATCCATGTTTGCAACCAAACATCCAGAGTTCGAAAATAg                                     >  1:115398/1‑143 (MQ=255)                                                                                                           gAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAgg                                    <  1:448818/143‑1 (MQ=255)                                                                                                              aCCTGTATCCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATc                                 <  2:92290/143‑1 (MQ=255)                                                                                                                cTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGACAATAGGATCaa                               >  2:186577/1‑143 (MQ=255)                                                                                                                cTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCaa                               >  2:191796/1‑143 (MQ=255)                                                                                                                cTGGATTCAATTGGCCGGATTAGTCCGGCTTTTCTTTTTCGCTAACTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCaa                               <  2:54296/143‑1 (MQ=255)                                                                                                                   tATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTAGAAAATAGGATCAacac                            >  2:195896/1‑143 (MQ=255)                                                                                                                     ttCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTTCAACGAAAGATCCAGAGTTCGAAAATAGGATCACCACaa                          >  2:619821/1‑143 (MQ=255)                                                                                                                           ttGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTACTCCAGTATTTCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATaaaa                    <  1:516334/143‑1 (MQ=255)                                                                                                                           aagccggacgaatCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATaaaa                    >  2:581779/13‑143 (MQ=255)                                                                                                                               cGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGccc                >  2:188988/1‑143 (MQ=255)                                                                                                                                       tCCGGCTTTTCTTTTTTGCTAATTATTCCATTATTCCAATTAAGTGGATTAATTTATTCAATATAAAGTACTTAAATCCATGTTTGTAACGAAAGATCTAGAGTTCGGAAATATTTTCAACTCAAATAAAAGCCCACGGATtg        >  1:730249/1‑143 (MQ=255)                                                                                                                                       tCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACTAATAAAAGCCCCCGGAAtg        >  2:194442/1‑143 (MQ=255)                                                                                                                                             ttttcttttTCGCTACTTATTCCATTCTTCCAATTAAGTGGAATAACTTATTCAATATCAAGAACTTAAAGCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATCGGCTCGACACAAACAAAAGCCGCCGGAAtgcgccaa  >  2:110152/1‑138 (MQ=255)                                                                                                                                             |                                                                                                                                               GCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAA  >  NC_000913/2560042‑2560324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.