New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	48 (0.830)	8 (0.160)	5/248	7.1	13.9%	coding (290/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	1209619 =	57 (1.120)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207650‑1207927                                                                                                                                              |                                                                                                                                          ggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGTG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTg                                                                                                                                         <  1:556841/143‑1 (MQ=255)     gAGGCTGCCGGTGCCAGGATGGAGAAGGGGCT‑GTACGACCAGTGACTTACCGCACTTCGCGCGCTGCTGGTAAGCCGCAAGCATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGttt                                                                                                                                     <  1:494522/143‑1 (MQ=17)      aGGCATCCGGTGCCAGCCTGGAGAAGGGGCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTg                                                                                                                                    >  2:961175/1‑143 (MQ=255)      aGGCATCCGGTGCCAGCCTGGAGAAGGGGCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTg                                                                                                                                    <  2:116412/143‑1 (MQ=255)       ggCGTCCGGTGCCGGCCTGGAGAAGGGGCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                   <  1:51800/143‑1 (MQ=255)             gagggCCGGCCTGGAG‑AGGGGCGTGCACGACCAGTGACTTACCGAGCTGCGTGGGCTGCTGTTAGGCCGCAAGAATCCGTTTGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAg                                                                                                                             <  1:164732/139‑1 (MQ=14)             cGGTGCCGGCCTGGAGCAGGGGCG‑TCACGACGAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAg                                                                                                                             <  1:54439/143‑1 (MQ=255)                tGCCAGCCTGGAGAAGGGGCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAggct                                                                                                                          >  1:55464/1‑141 (MQ=255)                 gccggcggggAGAAGGGGCG‑GCACGACCGGTTACTTCCCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGTGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc                                                                                                                         <  2:424689/135‑1 (MQ=18)                     gCCTGGAGAAGGGGCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                     <  2:59602/143‑1 (MQ=255)                     gCCTGGAGAAGGGGCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTATCGAAAACCTTGGTTCGGGAGACGGAGCcaaa                                                                                                                     >  1:669798/1‑143 (MQ=255)                      cgcggAGAAGGGGCG‑GCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                    <  2:59882/140‑1 (MQ=255)                          gagaAGGGGCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                <  2:594422/143‑1 (MQ=255)                             agggggCG‑GCACGACCGGTCACTGACCGCACTGCGCGCGCTGCGGTTAAGGCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                             <  1:957705/141‑1 (MQ=21)                             aaGGGGCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                             >  2:562616/1‑143 (MQ=255)                               ggggCG‑GCACGACCAGTGACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                           <  1:689718/143‑1 (MQ=255)                                gggCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAGAGGCTCTCGAAAAACTTGGATTGGGAGGAGGAGCAAAACTCAAGgcagc                                                                                                          >  1:537345/1‑143 (MQ=18)                                  gcg‑gcgCGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGCATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCATGGTTTGGGAGAAGGAGTAAAACTCAATGCAGCaa                                                                                                        <  1:456043/143‑1 (MQ=21)                                  gcg‑gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTAGGTTTGGGCGAAGGACCAAAACTCAATGCCGCaa                                                                                                        >  1:793863/1‑143 (MQ=255)                                          gACTAGTTACTTACCGCATTGCGCGCGCTGCTGTTAAGCGGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                 <  1:844043/143‑1 (MQ=255)                                          gACCAGTGACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                 <  1:829428/143‑1 (MQ=255)                                            ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGACACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGGTAAAt                                                                                               >  1:701304/1‑143 (MQ=255)                                                ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAAGCGGATGTCACTGTGCAAACGGCTCTCGAAGACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                           >  1:510915/1‑143 (MQ=255)                                                           aCTGCGCGCGCTGCTGTTACGCCGGAAGACTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt                                                                                <  1:592324/143‑1 (MQ=255)                                                               cgcgcgCTGCTGTTAAGCCGCAAGAAGCCGTTTGGCGATATCACATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                            <  1:44549/143‑1 (MQ=255)                                                                gcgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                           <  1:570193/143‑1 (MQ=255)                                                                           ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt                                                                >  2:947222/1‑143 (MQ=255)                                                                               gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCCAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACACTAGGGCGCACCGGTTTCCTAGCTATACCGGGTacg                                                            >  1:706523/1‑141 (MQ=25)                                                                                 cGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCAGTTTCATAGCTATACCGGTTATGag                                                          >  1:99841/1‑142 (MQ=255)                                                                                            gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAGCGGTTATGATTGGTGGTATTg                                               >  1:100159/1‑143 (MQ=255)                                                                                             tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                              <  1:688967/143‑1 (MQ=255)                                                                                                  cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                         <  2:377447/143‑1 (MQ=255)                                                                                                  cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                         >  2:215260/1‑143 (MQ=255)                                                                                                    ataaCAAATCGGAGGGGACTGTGCAAACGTCGCTCGAAAAGCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                       <  1:439939/143‑1 (MQ=255)                                                                                                       ccAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTa                                    <  2:640498/142‑1 (MQ=255)                                                                                                         aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTCTACCGGGTATAATTGGTGGTAATGAGCAACCAGCaaa                                  >  1:530551/1‑142 (MQ=38)                                                                                                                   gCACTGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                        <  2:865711/143‑1 (MQ=255)                                                                                                                    cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggg                       >  1:593639/1‑143 (MQ=255)                                                                                                                      cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggggg                     >  2:839012/1‑143 (MQ=255)                                                                                                                       tgtgCCAACCGCTCGCTGACACCTTGGCGTGGGAGAAGGAGCGAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGACTCGTAGTGTGGTGCAATCAGTAATCATTCAGTGGGGGt                    <  1:830853/143‑1 (MQ=255)                                                                                                                       tgcgcgaaCGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGt                    <  2:304210/137‑1 (MQ=255)                                                                                                                             aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATg              >  2:981094/1‑143 (MQ=255)                                                                                                                               cGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAACGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc            <  2:900679/143‑1 (MQ=255)                                                                                                                                 atgttcatgaaCGTTGGTTGTGGGGAAGGAGCCAAGCTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGc          <  1:565592/134‑1 (MQ=255)                                                                                                                                      cGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGCTATGATTGGTGGTATTGAGCAATCAGTAATCAGTCAGTAGTTGGGGGATGCCGCAAAAg     >  1:481922/1‑143 (MQ=255)                                                                                                                                       gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGTTTATGATTGTTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAga    >  1:984332/1‑142 (MQ=255)                                                                                                                                       gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGACTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTAGCATTGAGCAATCAGTAATCATTCCGTGGGGGTGGAATGCCGCAACAGc    >  1:16106/1‑143 (MQ=255)                                                                                                                                       gAAAACCTTGGTTTGGAAGAAAGAGCAAAACTCAATGCAGCAACGGCTCCATAAGGACGCACCGGTGTGATAGCTATACCGGATATGATTGGTGGCAGTGAGCAAGAAGAAATCATCCATGGGCGGTGAAATgacacgaaaac    >  1:484302/1‑133 (MQ=255)                                                                                                                                         gaaCCGTGGTTGGGGGGAAGGAGCAAAACTCAATGCGGCAGCGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt  <  1:383402/142‑1 (MQ=255)                                                                                                                                              |                                                                                                                                          GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCG‑GCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207650‑1207927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.