New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	44 (0.760)	6 (0.120)	6/248	6.6	11.1%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	57 (1.120)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG  >  NC_000913/1207665‑1207946                                                                                                                                             |                                                                                                                                              tGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAggct                                                                                                                                             >  1:55464/1‑141 (MQ=255)  gccggcggggAGAAGGGGCGGCACGACCGGTTACTTCCCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGTGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc                                                                                                                                            <  2:424689/135‑1 (MQ=18)      gCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                                        <  2:59602/143‑1 (MQ=255)      gCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTATCGAAAACCTTGGTTCGGGAGACGGAGCcaaa                                                                                                                                        >  1:669798/1‑143 (MQ=255)       cgcggAGAAGGGGCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                                       <  2:59882/140‑1 (MQ=255)           gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                   <  2:594422/143‑1 (MQ=255)              agggggCGGCACGACCGGTCACTGACCGCACTGCGCGCGCTGCGGTTAAGGCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                                                <  1:957705/141‑1 (MQ=21)              aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                                                >  2:562616/1‑143 (MQ=255)                ggggCGGCACGACCAGTGACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                                              <  1:689718/143‑1 (MQ=255)                 gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAGAGGCTCTCGAAAAACTTGGATTGGGAGGAGGAGCAAAACTCAAGgcagc                                                                                                                             >  1:537345/1‑143 (MQ=18)                   gcggcgCGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGCATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCATGGTTTGGGAGAAGGAGTAAAACTCAATGCAGCaa                                                                                                                           <  1:456043/143‑1 (MQ=21)                   gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTAGGTTTGGGCGAAGGACCAAAACTCAATGCCGCaa                                                                                                                           >  1:793863/1‑143 (MQ=255)                          gACTAGTTACTTACCGCATTGCGCGCGCTGCTGTTAAGCGGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                                    <  1:844043/143‑1 (MQ=255)                          gACCAGTGACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                                    <  1:829428/143‑1 (MQ=255)                            ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGACACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGGTAAAt                                                                                                                  >  1:701304/1‑143 (MQ=255)                                ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAAGCGGATGTCACTGTGCAAACGGCTCTCGAAGACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                              >  1:510915/1‑143 (MQ=255)                                           aCTGCGCGCGCTGCTGTTACGCCGGAAGACTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt                                                                                                   <  1:592324/143‑1 (MQ=255)                                               cgcgcgCTGCTGTTAAGCCGCAAGAAGCCGTTTGGCGATATCACATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                                               <  1:44549/143‑1 (MQ=255)                                                gcgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                              <  1:570193/143‑1 (MQ=255)                                                           ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt                                                                                   >  2:947222/1‑143 (MQ=255)                                                               gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCCAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACACTAGGGCGCACCGGTTTCCTAGCTATACCGGGTacg                                                                               >  1:706523/1‑141 (MQ=25)                                                                 cGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCAGTTTCATAGCTATACCGGTTATGag                                                                             >  1:99841/1‑142 (MQ=255)                                                                            gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAGCGGTTATGATTGGTGGTATTg                                                                  >  1:100159/1‑143 (MQ=255)                                                                             tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                 <  1:688967/143‑1 (MQ=255)                                                                                  cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                            >  2:215260/1‑143 (MQ=255)                                                                                  cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                            <  2:377447/143‑1 (MQ=255)                                                                                    ataaCAAATCGGAGGGGACTGTGCAAACGTCGCTCGAAAAGCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                                          <  1:439939/143‑1 (MQ=255)                                                                                       ccAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTa                                                       <  2:640498/142‑1 (MQ=255)                                                                                         aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTCTACCGGGTATAATTGGTGGTAATGAGCAACCAGCaaa                                                     >  1:530551/1‑142 (MQ=38)                                                                                                   gCACTGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                                           <  2:865711/143‑1 (MQ=255)                                                                                                    cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggg                                          >  1:593639/1‑143 (MQ=255)                                                                                                      cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggggg                                        >  2:839012/1‑143 (MQ=255)                                                                                                       tgtgCCAACCGCTCGCTGACACCTTGGCGTGGGAGAAGGAGCGAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGACTCGTAGTGTGGTGCAATCAGTAATCATTCAGTGGGGGt                                       <  1:830853/143‑1 (MQ=255)                                                                                                       tgcgcgaaCGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGt                                       <  2:304210/137‑1 (MQ=255)                                                                                                             aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATg                                 >  2:981094/1‑143 (MQ=255)                                                                                                               cGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAACGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                               <  2:900679/143‑1 (MQ=255)                                                                                                                 atgttcatgaaCGTTGGTTGTGGGGAAGGAGCCAAGCTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGc                             <  1:565592/134‑1 (MQ=255)                                                                                                                      cGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGCTATGATTGGTGGTATTGAGCAATCAGTAATCAGTCAGTAGTTGGGGGATGCCGCAAAAg                        >  1:481922/1‑143 (MQ=255)                                                                                                                       gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGTTTATGATTGTTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAga                       >  1:984332/1‑142 (MQ=255)                                                                                                                       gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGACTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTAGCATTGAGCAATCAGTAATCATTCCGTGGGGGTGGAATGCCGCAACAGc                       >  1:16106/1‑143 (MQ=255)                                                                                                                       gAAAACCTTGGTTTGGAAGAAAGAGCAAAACTCAATGCAGCAACGGCTCCATAAGGACGCACCGGTGTGATAGCTATACCGGATATGATTGGTGGCAGTGAGCAAGAAGAAATCATCCATGGGCGGTGAAATgacacgaaaac                       >  1:484302/1‑133 (MQ=255)                                                                                                                         gaaCCGTGGTTGGGGGGAAGGAGCAAAACTCAATGCGGCAGCGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt                     <  1:383402/142‑1 (MQ=255)                                                                                                                           gccgtGGTTTGGGAGGAGGGGCAAAAGTGAAGGCAGGAGCGGCTACATGAGGACGCACCGGTGTCATGGCTGTACCGGGTCTGATTGGTGGTATTGGGCGATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCt                   <  2:909810/139‑1 (MQ=255)                                                                                                                                    tGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGCGCAATCAGTAATCATTCAGTGGGGGTGGAATGCGGCAAAAGCATCTGCCTCTggg          >  2:926211/1‑143 (MQ=255)                                                                                                                                            ggAGCAAAACTCAATGCAGCAACGGCTACGTTAGGACGCACCGGTTTCATAGCCAAACCGGATATAACTGGTGGTATTGAGCGATCAGTAAACATTCAGTGGCGGTGGCATGGCGCGAAGGCAACTGCCCCAGGGGGGGGTgc  >  1:25599/1‑142 (MQ=255)                                                                                                                                             |                                                                                                                                              TGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG  >  NC_000913/1207665‑1207946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.