New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1293032 =2 (0.030)63 (1.090) 51/280 0.1 96.9% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)intergenic (‑55/‑483) insA/uspC IS1 repressor TnpA/universal stress protein

Only 100 of 112 total aligned reads displayed.

ATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGC  >  NC_000913/1292891‑1293172
                                                                                                                                             |                                                                                                                                            
ggcttgtgttcggcggtgcgttgggcggtacgctccgccccgtcgctagctgaacaggagggacagctgatagaaaccgacgccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctt                                                                                                                                             >  1:467412‑M1/142‑143 (MQ=255)
  ctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTtgt                                                                                                                                           >  2:711390‑M1/140‑143 (MQ=255)
      ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATGATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCACAATTGTTCTTTATGTTGTgccg                                                                                                                                       >  2:173131/1‑143 (MQ=255)
       gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggccagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccATGTgccgc                                                                                                                                      <  1:30966‑M1/9‑1 (MQ=255)
        tccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgcc                                                                                                                                     <  1:767796‑M1/10‑1 (MQ=255)
        cAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTCTATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgg                                                                                                                                     <  1:663026‑M2/143‑3 (MQ=255)
        cAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATACTAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgc                                                                                                                                     <  1:860393‑M2/143‑3 (MQ=255)
         aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGTTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGAAATGTAAGGAATTCAAAATTGTTCTTAAATTTGTGCCGggt                                                                                                                                    <  1:989846‑M2/143‑4 (MQ=255)
          cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaa                                                                                                                                   >  2:154216‑M1/132‑143 (MQ=255)
          cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaa                                                                                                                                   >  1:632285‑M1/132‑143 (MQ=255)
           ggcggtggtcttgccgtgacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaat                                                                                                                                  >  2:966180‑M1/131‑143 (MQ=255)
           ggcggtgcttttgccgtgacgcagcacgccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaat                                                                                                                                  >  2:268084‑M1/131‑143 (MQ=255)
            gcggtgcttttgccggtacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaata                                                                                                                                 >  2:787900‑M1/130‑143 (MQ=255)
            aTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                 >  2:415410‑M2/1‑137 (MQ=255)
               gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataaat                                                                                                                              >  2:868533‑M1/127‑143 (MQ=255)
                tgcttttcccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataaata                                                                                                                             <  2:912510‑M1/18‑1 (MQ=255)
                   ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCt                                                                                                                          <  2:221337‑M1/21‑1 (MQ=255)
                    tGCTTCGCTCATTGTGGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTATATTTTGTGCCGggtaatgactccaa                                                                                                                         >  1:125213‑M2/1‑129 (MQ=255)
                    cgcTTCTCTCCTTGTAGTTACCGCAAACTTAGATTGGGGTGGTTTGTTGAGGTAAGAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaa                                                                                                                         >  2:267831‑M2/2‑129 (MQ=255)
                      tgccgttacgcaccaccccgtcagtagctgaacaggagggacagcggatagaaacagaagccactggagcacctcaaaaacaccagcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCcttt                                                                                                                       <  2:74025‑M1/24‑1 (MQ=255)
                       ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactt                                                                                                                      <  2:730387‑M2/143‑18 (MQ=255)
                          gCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttatt                                                                                                                   >  1:706159‑M2/1‑123 (MQ=255)
                           ttacgcaccaccccgtcagtagctgaacaggagggacagctgctagaaacagaagccactggagcacctcaaaaacaccatcatacactaatgcagtaagttggcagcatcaccTTGTGCAGCCAATAAATATCTTGTcatca                                                                                                                  <  1:537155‑M1/29‑3 (MQ=255)
                            tacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagtcactggagcacctcaaacacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaa                                                                                                                 >  1:651009‑M1/114‑143 (MQ=255)
                            tacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaa                                                                                                                 >  2:848848‑M1/114‑143 (MQ=255)
                              aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAACTTGTTTTTAGTTTTGTGCCGggtaatgactccaacttattgata                                                                                                               >  1:671462‑M2/1‑119 (MQ=255)
                               gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATATTTTCATAAAatg                                                                                                              <  1:282842‑M1/33‑2 (MQ=255)
                               gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaggtggacgcatcaccTTGTGCCGCGACTAAATATCTTTTCATAAAAtt                                                                                                              <  2:276119‑M1/33‑1 (MQ=255)
                                  gcaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                           >  2:567455‑M1/108‑143 (MQ=255)
                                    accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCa                                                                                                         <  1:518050‑M1/38‑1 (MQ=255)
                                     taATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtttt                                                                                                        >  2:149621‑M2/1‑112 (MQ=255)
                                          tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                   <  1:485753‑M2/143‑37 (MQ=255)
                                           cAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCGTTATTATGTGCCGggtagtgactgcaagtgaatgagagtgtgttgtagtc                                                                                                  <  2:77371‑M2/143‑38 (MQ=255)
                                            aaaCGTATAGGGGGGTGGTTTGGTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTGCTTGATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                                 >  1:451734‑M2/1‑105 (MQ=255)
                                              tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcgc                                                                                               >  1:388251‑M1/96‑143 (MQ=255)
                                                 ctgaacagtagggacagctgatagaaacagaatccaccggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGc                                                                                            >  1:861107‑M1/93‑143 (MQ=255)
                                                     ttGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                        >  2:881121‑M2/1‑96 (MQ=255)
                                                       aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAACTATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAg                                                                                      >  1:871061‑M1/87‑143 (MQ=255)
                                                         gagtgacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGcc                                                                                    >  1:866288‑M1/85‑143 (MQ=255)
                                                          agggacagctgatagaaacagacgccactggagcacctcaaaaacaccatcctacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCCTAAAATTAGCCAGAAAAGACGCGGCATATAGccc                                                                                   >  2:282941‑M1/84‑143 (MQ=255)
                                                             gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact                                                                                <  2:198622‑M2/143‑56 (MQ=255)
                                                             gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAt                                                                                >  2:767796‑M1/81‑143 (MQ=255)
                                                               tagttgagGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                              >  2:750‑M2/3‑86 (MQ=255)
                                                                tgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAATTTGTGCTTTACTTTGTGCAGcttaatgactccaacttattgatagtgtttgatgttcagataatgcccgatgactttg                                                                             >  1:720407‑M2/1‑85 (MQ=255)
                                                                agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTa                                                                             <  2:689863‑M1/66‑1 (MQ=255)
                                                                 gttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatcgtgttttaggttcagataatgcccggtgactttgt                                                                            <  2:326834‑M2/143‑60 (MQ=255)
                                                                   tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                          <  1:35804‑M1/69‑1 (MQ=255)
                                                                   tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacaTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCAAGAGAAGACGCGGCATATAgcgctatgtagac                                                                          <  2:461131‑M1/69‑7 (MQ=255)
                                                                     atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCg                                                                        <  2:755269‑M1/71‑1 (MQ=255)
                                                                       gTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactacttgcgagaggattatgttcagataatgcccgatgactttgtcatgca                                                                      <  2:734507‑M2/143‑66 (MQ=255)
                                                                       agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACCCcgac                                                                      <  2:253476‑M1/73‑2 (MQ=255)
                                                                       agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACAccgct                                                                      <  1:490261‑M1/73‑3 (MQ=255)
                                                                        gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATACAATTAGCCAGACAAGCCGCGGCATATAGCCCTCTTTACACCgatg                                                                     <  1:348357‑M1/74‑1 (MQ=255)
                                                                          ataataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagct                                                                   >  2:705355‑M2/1‑75 (MQ=255)
                                                                           taataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctc                                                                  <  1:646202‑M2/143‑70 (MQ=255)
                                                                               agtgctgtaaattcaGTTGTGCACGAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCTGggtaatgactccaacttattgatagtgttttatgttcagataatgtctgatgtctttgtaatgcaggtccacc                                                              >  1:103230‑M2/8‑70 (MQ=255)
                                                                               aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgc                                                              >  2:943879‑M1/63‑143 (MQ=255)
                                                                                    actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCAc                                                         <  1:138572‑M1/86‑1 (MQ=255)
                                                                                     ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                        >  1:730387‑M2/1‑64 (MQ=255)
                                                                                     ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                        <  2:368172‑M2/143‑80 (MQ=255)
                                                                                      tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATGAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATCTCGCAGCACGt                                                       <  2:78259‑M1/88‑1 (MQ=255)
                                                                                      tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGt                                                       >  2:518050‑M1/56‑143 (MQ=255)
                                                                                       aaaTGCAGTGGTGCAATAGCCAGTGATGTAAGGAATTCAAAATTGTGCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                      >  1:583112‑M2/1‑62 (MQ=255)
                                                                                        gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGACAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                     <  1:818253‑M1/90‑1 (MQ=255)
                                                                                        aaTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcaaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgag                                                     <  1:741152‑M2/143‑83 (MQ=255)
                                                                                          gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGACAAGACGCGGCATGTAGCCCTATCTACACCGCTGATTTCGCAGCAAGTGAgg                                                   <  1:351044‑M1/92‑1 (MQ=255)
                                                                                          gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTCTTTAAACCGATGATTTCGCCGCCAGTGAgg                                                   <  1:348522‑M1/92‑1 (MQ=255)
                                                                                             cctcaacaacaccatcatacactaaatcagtaagttggcagcatcgccTTGTGCCGCCCCTAAATATCTTTTCAAGAAAGTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTa                                                >  2:231690‑M1/49‑143 (MQ=255)
                                                                                             aGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcaaacttattgatagtgttttatgttcagataatgcccgatgactgtgtcattcagcgccaccgattttgagaacga                                                <  1:562274‑M2/143‑88 (MQ=255)
                                                                                              ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                               <  1:434392‑M1/96‑1 (MQ=255)
                                                                                              ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                               >  1:1009750‑M1/48‑143 (MQ=255)
                                                                                               ttGTGCAATAGGCGGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTTTGCCGtgtaattactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                              >  1:771224‑M2/1‑54 (MQ=255)
                                                                                                caaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCCAGTGAGGTTaaaa                                             <  1:80668‑M1/98‑1 (MQ=255)
                                                                                                 gtgCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagc                                            <  2:351952‑M2/143‑92 (MQ=255)
                                                                                                   acacaccctcagacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACtt                                          >  1:904655‑M1/43‑143 (MQ=255)
                                                                                                    cAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcaaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatgttgcggacgacggcgac                                         <  1:78565‑M2/143‑95 (MQ=255)
                                                                                                     acaccatcatacactaaatcagtaagctggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTcc                                        >  2:64165‑M1/41‑143 (MQ=255)
                                                                                                            aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc                                 <  2:244466‑M2/143‑103 (MQ=255)
                                                                                                                 actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTca                            <  2:872021‑M1/115‑1 (MQ=255)
                                                                                                                 actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTca                            <  1:288956‑M1/115‑1 (MQ=255)
                                                                                                                   tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                          <  2:832015‑M2/143‑110 (MQ=255)
                                                                                                                     aatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAtt                        <  2:427271‑M1/119‑1 (MQ=255)
                                                                                                                         agtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAt                    <  1:141529‑M1/123‑1 (MQ=255)
                                                                                                                          gtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCAGGTGAGGGTAAAACTTcgtgatgcatgtgacgttgtagg                   <  2:967934‑M1/124‑12 (MQ=255)
                                                                                                                            cAAAGTTGTTCTGTGTGTGGGGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttggtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgc                 >  1:173131‑M2/1‑25 (MQ=255)
                                                                                                                              gttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATCTAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGga               <  2:12604‑M1/128‑1 (MQ=255)
                                                                                                                              gttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGga               >  1:755269‑M1/16‑143 (MQ=255)
                                                                                                                              aaaTGGTTCTGTATTTTGTGCCGggtagtgactccaacttattgacagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctg               >  1:457754‑M2/1‑23 (MQ=255)
                                                                                                                                  tGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc           >  2:489827‑M2/1‑19 (MQ=255)
                                                                                                                                   cagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTa          >  2:792178‑M1/11‑143 (MQ=255)
                                                                                                                                     acatttccttGTGTCTCCAACAAATAACTTCGAAGAACAATAGCCAGAAAAGGCGAGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCATGATTCATGTCACATTTTATGGGGAGATTATc        <  2:4718/135‑1 (MQ=255)
                                                                                                                                      catcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCg       <  1:571324‑M1/136‑1 (MQ=255)
                                                                                                                                       tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt      <  2:644826‑M2/143‑130 (MQ=255)
                                                                                                                                       tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt      <  2:256768‑M2/143‑130 (MQ=255)
                                                                                                                                       atcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGACTATCGt      <  1:563617‑M1/137‑1 (MQ=255)
                                                                                                                                         tATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattca    >  1:198622‑M2/1‑12 (MQ=255)
                                                                                                                                          aTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcgaccgattttgagaccgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag   <  2:691377‑M2/143‑133 (MQ=255)
                                                                                                                                          aTTGTGTGCCGggtaatgactccaacgtattgatagggttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag   >  1:351952‑M2/1‑11 (MQ=255)
                                                                                                                                           ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg  >  1:368172‑M2/1‑10 (MQ=255)
                                                                                                                                           ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccggcccagccgtgccaggtgctgcctcagattcagg  >  2:210348‑M2/1‑10 (MQ=255)
                                                                                                                                             |                                                                                                                                            
ATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGC  >  NC_000913/1292891‑1293172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.