| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258675 | 258683 | 9–776 | 64 [0] | [0] 64 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 62 (1.140) | 53/264 | 0.0 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG > NC_000913/258542‑258824 | tgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa > 2:245346‑M2/143‑143 (MQ=255) ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 2:921116‑M2/3‑1 (MQ=255) taaaaatttgctaaattttgccaattttgtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg < 2:673590‑M2/4‑1 (MQ=255) aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc > 2:848977‑M2/139‑143 (MQ=255) aaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa > 1:23448‑M2/137‑143 (MQ=255) aatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa < 2:276229‑M2/8‑1 (MQ=255) aatgtgctaaatgttgccaatttgggaaaacagtggcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa < 1:282380‑M2/8‑1 (MQ=255) ctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaaagacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt > 2:912319‑M2/130‑143 (MQ=255) ctaaattgtgccaatttggtaagacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt < 1:17032‑M2/14‑1 (MQ=255) taaatgttgccaatttggtaaacaagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc < 1:852239‑M2/15‑1 (MQ=255) tttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc < 2:293108‑M2/20‑1 (MQ=255) tgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgcgtggccacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt > 2:909050‑M2/122‑143 (MQ=255) aatttggttacgcagttgcatcacaagaagatatagcaatgacgttaccgagtggacgctcgaatagcagattgatcaaaaaatttaccgctctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc < 1:421537‑M2/26‑1 (MQ=255) aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAGGATAATCGATTCTTTTTc > 1:85251‑M2/118‑143 (MQ=255) tttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTcgg > 2:867343‑M2/116‑142 (MQ=255) tttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa < 1:736308‑M2/28‑1 (MQ=255) taacacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTc < 2:951934‑M2/33‑1 (MQ=255) aaaacagttgcagcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCt < 2:877191‑M2/34‑1 (MQ=255) aaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATG‑GTCTg > 1:22456‑M2/109‑143 (MQ=255) aaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAGCGATTCTTTTTCGATT‑GTCTg > 1:22455‑M2/109‑143 (MQ=255) acagttgcatcacaacaggagatagcaatgacgttaacgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaagggaAGTGCAAAGATAAACGATTCGTTTTCGATT‑GTCTGGc > 2:942945‑M2/107‑143 (MQ=255) gtcgcaacacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttgccgcactaggcccgtttattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGt < 1:611984‑M2/40‑1 (MQ=255) ttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTa > 1:253145‑M2/103‑143 (MQ=255) tagcatcacaccaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtggaggttAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTa < 1:614399‑M2/41‑1 (MQ=255) catcacaacaggagaaagaaatgacgaaacggaggggacacccgaagagcagattgtagtctaaatgtaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGc < 2:468715‑M2/44‑1 (MQ=255) atcacaacaggagatagcaatgacgttaccgtttggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtgtattcgtgaaggtaAGTGCACAGATAACCGATTCTTTTTGGATT‑GTCTGGCTGTATGCg > 1:499103‑M2/99‑143 (MQ=255) tcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactcggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGt > 1:255772‑M2/98‑143 (MQ=255) acaacaggagatagcaatgacgttaccgagtggacacccgaagagcagacggatcaaaaaatttaccgcactaggcccggatattcgtgaaggtaAGTGCAAAGATAATCGATTCTCTTTCGATT‑GTTTGCCcgtatgtctcg > 2:966175‑M2/96‑138 (MQ=255) aacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGTAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAAc > 2:49175‑M2/94‑143 (MQ=255) ggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGa < 1:893440‑M2/54‑1 (MQ=255) ggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGa < 2:759916‑M2/54‑1 (MQ=255) ggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAGTCTTTTTCGATT‑GTCTTGCTGTATGCGTCAACGTGa > 2:901430‑M2/90‑143 (MQ=255) gagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGaa > 1:307337‑M2/89‑143 (MQ=255) gagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggccagtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGaa > 2:406334‑M2/89‑143 (MQ=255) agatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgacggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGaaa > 2:600495‑M2/88‑143 (MQ=255) agcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATCCTTTTTCGATT‑GACTGGCCGTATGCGTCACCGTGAAACCgg > 1:710112‑M2/84‑143 (MQ=255) gttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTT‑GTCTGGCTGTATGCGTCACCCTGAAACCGGCaccggcac > 2:558063‑M2/75‑140 (MQ=255) gagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAACCCGTCACCGGCAGTGCGTg > 1:647419‑M2/69‑143 (MQ=255) gtggacacccgaagagcagatggatcaaaaaatttaccgcactaggcccgtagattcgcgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGaa < 2:915271‑M2/77‑1 (MQ=255) tggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAt > 1:104609‑M2/66‑143 (MQ=255) acccgaagagcagattgatcaaaaaatttaccgcactcggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgg < 1:540870‑M2/83‑1 (MQ=255) ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGATGCCGGCACCGGAAGTGCGTGAATTCTgggg > 2:119193‑M2/59‑143 (MQ=255) ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgggg > 1:324887‑M2/59‑143 (MQ=255) gagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGctggg > 2:889527‑M2/54‑142 (MQ=255) attagatggatcaaaaaatttactgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCGTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg < 2:647419‑M2/91‑1 (MQ=255) agcagattgatcaaaaaatttaccgcactaggcccgtatattagtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACTGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg < 1:911036‑M2/91‑1 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggatgga < 2:324887‑M2/97‑1 (MQ=255) tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGCGCTg > 1:99711‑M2/43‑143 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa > 2:826130‑M2/41‑143 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa > 2:186178‑M2/41‑143 (MQ=255) gaaaagttaccgcgctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGaa < 1:448009‑M2/104‑1 (MQ=255) aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGaa < 1:665151‑M2/104‑1 (MQ=255) ttccgcgctaggctcgtatattcgggaaggtaAGTGCAAAGATAATCGCTTCTTTTTCGATT‑GTCTGGCTGTATGCGCCAACGTGAAACCGGCCCCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAgg < 1:388674‑M2/111‑1 (MQ=255) ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAAGTCTGGGGCGGGTGGGTGGAGCTGGAGGCGcaggga > 2:611525‑M2/31‑141 (MQ=255) gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGACGTGCGTGAATTCTGGGGCGGGTCGCTGGCGCCGGTGGCGTCGGAATc > 2:268753‑M2/29‑143 (MQ=255) gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGACTTCTGGGGCTGGTGGATGGGGCTGGGCGCGCAGGACTc > 2:77745‑M2/29‑143 (MQ=255) ccactagtcccgtatattcgtgaagttaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTCTGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATc < 1:206942‑M2/115‑1 (MQ=255) cactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATcc < 1:186178‑M2/116‑1 (MQ=255) actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTCACATTAGTC‑ATCTGGATTCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATccc < 2:468268‑M2/117‑1 (MQ=255) atattcgttaaggtaAGTGCAAAGATACTCGTTCCATCAAGTCTT‑GTCTTGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTAc < 1:446053‑M2/128‑1 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTa < 2:23448‑M2/133‑1 (MQ=255) gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTAc < 2:750237‑M2/134‑1 (MQ=255) taAGTGCAAAGGTAATCGATGCTGTTTGGGTT‑GGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg < 2:686852‑M2/141‑1 (MQ=255) taAGTGCAAAGATAATCGATTCTTTTTCGAGT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg < 1:245346‑M2/141‑1 (MQ=255) | GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATT‑GTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG > NC_000913/258542‑258824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |