Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 257,908 Δ776 bp 100% [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 32 [0] [0] 31 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)28 (0.750) 22/460 NT 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

CCCGGAAGAGGACTCACGCTTAATCACCTCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGA  >  NC_000913/257633‑258172
                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                         
ccgggaagAGGACTCACGCTTAATCACCTCAGCGTCTTCTGAAGGTAAATTAGTAGAGATCCCATTTAACCCGTGGTGTAGCGATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATGTGCTAAATGTTGCCAATTTGGTAAAAAAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGAGTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTA                                                                                                                                                                                                                                                                           <  1:282005‑M1/272‑1 (MQ=255)
               aCGCTTAATCACCTCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataacc                                                                                                                                                                                                                                                            >  1:178612‑M1/1‑260 (MQ=255)
                   tttatctCCTCATCAACTGCTGACGGTAAATTATTAGAGATCCCATTTATCCCGGTGTATCGGAATTTTGACAAAGGTCTTCATGAAATCACCGACTGGATCGAAAAACGCGTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                                                                                                                                                         <  2:310617‑M1/271‑19 (MQ=255)
                    tAATCACCTCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATGTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTAACGAGTGGACACCCGAAGAGCAGATTGAGCAAAAAATTTACCGCACTAGGCCCGTATATTGGTGAAGGTAagtgcaaagataatcga                                                                                                                                                                                                                                                          >  2:368384‑M1/1‑255 (MQ=255)
                                tactggctgacggtAAATTATTATAGATCCCAATTAACCCGGTTTAGCGGAAGTTTGACAAAGGTCTTCAGGAAATCACCGACTGGTTCGAAAAACGCTTGGGTTAAAAATTTGCTAAATTTTACCAATTTGGTAAAACAGTTGCATCACAACAGGAGCTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGACCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgtttgt                                                                                                                                                                                                                                           <  1:368384‑M1/270‑33 (MQ=255)
                                 atttgctgacgGTAAATTGTTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCATGAAATCACCGACTGGATAGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGGCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACTTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt                                                                                                                                                                                                                                           <  2:249034‑M1/271‑33 (MQ=255)
                                 atcTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt                                                                                                                                                                                                                                           <  2:4038‑M1/274‑33 (MQ=255)
                                               aaTTATTAGAGAACCCAGTTAACCAGGTGTATCTGAATTTTGACAAAGGTCTTCAGGAAATCACCGACCTGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGTAGATATCAAGGACGTTACCGAGTGGACCCCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGCATATTCGTGAAGGTAagttcaaagataatcgattctttttcgattgtctggctgtatgcgtc                                                                                                                                                                                                                            <  2:178612‑M1/275‑48 (MQ=255)
                                                            cccATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCCCTAGGCCCGTATATTAGTGACGGTAagtgcaaagataatcgattctttttcgagtgtctggatgtatgcgtcaacgtgaaaccgt                                                                                                                                                                                                               >  1:218682‑M1/1‑215 (MQ=255)
                                                                         gtgtATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                                                                                                                                                     >  2:385965‑M1/1‑202 (MQ=255)
                                                                         gtgtATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                                                                                                                                                     >  2:121361‑M1/1‑202 (MQ=255)
                                                                          tgtATCGGAATTTTTACAAACGTCTTCAGTAAATCACCGACTGGAGCGAAAAACGCTTGTGTTAAAAATTTGCTACATTTTGCCAATTTGTTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGGGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGTCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgtctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                                                                                                                                                 <  2:218682‑M1/275‑75 (MQ=255)
                                                                          tgtATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                                                                                                                                                 >  2:346128‑M1/1‑201 (MQ=255)
                                                                                              ggTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                                                                                                                                             <  1:121361‑M1/275‑95 (MQ=255)
                                                                                               ggcttCAGGAAATAACCGACTGGATCGAAAAACGCTTGTTTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGTACACCCGAAGAGCAGATTGATCAAAAAATTTACCGTACTAGGCCCGTATATTCGTGAATGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcggcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                                                                                                                                             <  1:384945‑M1/272‑95 (MQ=255)
                                                                                                                            aaccgctTGTGTTAAAAAGTTGCTAAATTGTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttggattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                                                                                                                                               <  2:362066‑M1/272‑125 (MQ=255)
                                                                                                                                gCTTGTTTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                                                                                                                                            <  2:267940‑M1/274‑128 (MQ=255)
                                                                                                                                                               aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcag                                                                                                            <  1:346128‑M1/275‑160 (MQ=255)
                                                                                                                                                                 ttGGGAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggc                                                                                                          <  1:385965‑M1/275‑162 (MQ=255)
                                                                                                                                                                 gtgGTAAAAAAGTGTCAGCACAACAGTAGATAGCAGTGACGTTACCGAGTGGACACCCAGAGAGCAGATTGATCAAAAAATGTACCGCACTAGGCCCGTATCTTCGTGAAGGTAagtgcaaagataatccattctttttcgattgtttggctgtatgcttcaaagtgaacccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccaggttggtctgttcgataaatcaggc                                                                                                          <  1:45455‑M1/274‑162 (MQ=255)
                                                                                                                                                                              tGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtg                                                                                             >  1:125851‑M1/1‑101 (MQ=255)
                                                                                                                                                                                                     tGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacagtgaagtg                                                                      >  2:146192‑M1/1‑78 (MQ=255)
                                                                                                                                                                                                         gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgact                                                                                                      >  1:311959‑M1/1‑74 (MQ=255)
                                                                                                                                                                                                             ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaa                                                                                                  <  2:311959‑M1/239‑170 (MQ=255)
                                                                                                                                                                                                               ggatggaCACCCGAAGGTCAGATGGATCAAAAAAGTTACCGTGCTAGGCCCGGAGATTCGTGAAGGTAagggcaaagataatcgattcttttttgattgtctggctggatgcgtcaacgtgaaaccggcactggatgtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccggtttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttcctgtaaaagacactgaagtggttgaacgac                                                            <  1:214488‑M1/272‑208 (MQ=255)
                                                                                                                                                                                                                    gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagc                                                                                                              >  1:37968‑M1/1‑63 (MQ=255)
                                                                                                                                                                                                                        cccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggc                                                                                                          <  2:37968‑M1/220‑162 (MQ=255)
                                                                                                                                                                                                                                   gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaa                                                                                                                                     >  2:197317‑M1/1‑48 (MQ=255)
                                                                                                                                                                                                                                       gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagt                                                                                                                                 <  1:197317‑M1/182‑139 (MQ=255)
                                                                                                                                                                                                                                                                         cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacatacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcacacgctgcgtgagtttcacgagaagctgggtgaagtggtgacgacggcgaa  >  2:145006‑M1/1‑10 (MQ=255)
                                                                                                                                                                                                                                                                             aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga                                                                                                                                                                                                                     >  2:150701‑M1/1‑6 (MQ=255)
                                                                                                                                                                                                                                                                                 tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                                                                                                                                                 <  1:150701‑M1/60‑59 (MQ=255)
                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                         
CCCGGAAGAGGACTCACGCTTAATCACCTCATCATCTGCTGACGGTAAATTATTAGAGATCCCATTTAACCCGGTGTATCGGAATTTTGACAAAGGTCTTCAGGAAATCACCGACTGGATCGAAAAACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGA  >  NC_000913/257633‑258172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: