New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 128708469 (0.890)6 (0.090) 4/240 10.4 9.2% noncoding (153/171 nt) rttR rtT sRNA, processed from tyrT transcript
?NC_000913 1287557 = 60 (0.900)noncoding (66/85 nt) tyrT tRNA‑Tyr
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTC  >  NC_000913/1286943‑1287225
                                                                                                                                             |                                                                                                                                             
cTGCGGCCACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTa                                                                                                                                              <  2:1034486/143‑1 (MQ=255)
 tGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCCTGGGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttcg                                                                                                                                             >  1:713407/1‑141 (MQ=255)
  gCGGCAACGCTCTCTCGCTGAAGCTCAAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACt                                                                                                                                            <  2:355831/143‑1 (MQ=255)
       gaCGCTCTCGCGCTGCCGCGCGAGCCGCACGTTGGTCGAAGCTTCTCATCCTTCCCCGCGTCGGCAGAATATTTGATTGCGGATGCGCTTGAGGTTTCAGTGACTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAgcg                                                                                                                                       <  1:455935/142‑1 (MQ=14)
         cGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCt                                                                                                                                     >  1:614344/1‑143 (MQ=255)
         cGCTCTCTCGCTGACGCTCGAGCAGAACCTTAGACGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATATCTGATTCGCTTGAAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGAGGGAAGGATTCGTCCgcgcg                                                                                                                                     >  1:1097686/1‑142 (MQ=14)
            tctctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcg                                                                                                                                  <  1:503245/143‑1 (MQ=255)
            tctctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTCGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcg                                                                                                                                  >  1:605287/1‑143 (MQ=255)
              tctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCCGCGCGgagcg                                                                                                                                >  1:435678/1‑143 (MQ=255)
              tctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgcg                                                                                                                                <  2:447191/143‑1 (MQ=255)
                  gCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGGAGGATTACTCAGCGCTGCGCGCTTc                                                                                                                            >  2:333454/1‑143 (MQ=255)
                   cTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATCTTTGATTGCGGAGTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAGGGATTACGCCGCGCTACGCGGttgg                                                                                                                           >  1:814717/1‑141 (MQ=17)
                    tGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGGTGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGc                                                                                                                          >  2:1179774/1‑143 (MQ=255)
                    tGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGTGGGAAGGATTAATCAGCGCTGCGCGCTTCGc                                                                                                                          <  2:855744/143‑1 (MQ=255)
                    tGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgagattaat                                                                                                                          >  2:489784/1‑135 (MQ=255)
                          tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGGGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCCTACGTGCGGCGCGCTTCGCCCCTcc                                                                                                                    >  2:907337/1‑142 (MQ=17)
                          tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAGCACGCGCTGCTCGCTTCACCCCTcc                                                                                                                    >  1:1179987/1‑142 (MQ=17)
                          tCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCg                                                                                                                    >  2:242958/1‑143 (MQ=255)
                             aGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGCAGAATATTTGATTGCGGATTCGCTTGCGCGTTCAGGGACCTTTGAAAGTGATGGTGGTGGGGGCAGGATTACACAGCGCGACGCGCCTGGcccgaggggta                                                                                                                >  1:1122463/1‑135 (MQ=14)
                                cGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGTGAGCGCAGCGCACTTGGcgccgcacgtcgc                                                                                                              >  1:674372/1‑131 (MQ=14)
                                 gacccTGAGTCGAAGCTTCGCATTGTTCACCGCATTGCCAGAATATTTGATTGGGGATGCGTTTGAGGGTTCGGGGATTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGtt                                                                                                             <  1:564152/140‑1 (MQ=11)
                                 gAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGGGAGTTCAGGGACTGTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTGCGCCCTGCGGGACGtt                                                                                                             >  1:82985/1‑143 (MQ=17)
                                 gAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGtt                                                                                                             <  2:278267/143‑1 (MQ=255)
                                     cTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCGGCGCGCTTCGCCCTTCGGGTCgaggctt                                                                                                         >  2:677253/1‑137 (MQ=255)
                                          tCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTTGAGAGTTCAGGGACTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCGGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGc                                                                                                    <  2:606947/143‑1 (MQ=255)
                                                cgtctcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct                                                                                              <  2:1329932/141‑1 (MQ=255)
                                                cTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGct                                                                                              >  1:1329932/1‑143 (MQ=255)
                                                  tctcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctct                                                                                            <  2:927840/143‑1 (MQ=255)
                                                  tctcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctct                                                                                            >  2:1227787/1‑143 (MQ=255)
                                                    tcATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACGCCGCGCTGCGCGGATGGCCGTTGGGGGCGTTGCCTGCGGCCACGgtcgct                                                                                          >  1:242757/1‑143 (MQ=14)
                                                     cATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTCCGCCACCGCcctctc                                                                                         >  2:538608/1‑143 (MQ=255)
                                                      aTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCg                                                                                        >  2:405720/1‑143 (MQ=255)
                                                        ccTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGTTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGcg                                                                                      >  2:431378/1‑142 (MQ=255)
                                                          ttCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTTGGGGAAGGATTAGTCCGCGCGACGCGCTTCGCGGCTCGGGTCGGTGCTGGCGGCAACGcccgcccggggg                                                                                    >  1:1178678/1‑132 (MQ=14)
                                                          ttCCCCGCATGGGCAGAATATTTGATTGCGGAACTGTTTGAAAGATCAGGGACTTTTGAAAGTGATGGTGGTGGTGGGAGGAGTACTAAGCGCGACGCGCGTCGCGCCTCGGGTCGAGGCCGGCGCCAACGcccgcgcgcgac                                                                                    >  1:1179553/1‑132 (MQ=2)
                                                             cccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGgcgc                                                                                 >  2:233203/1‑143 (MQ=255)
                                                              ccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGgcgca                                                                                >  2:755144/1‑142 (MQ=255)
                                                                gCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCg                                                                              <  2:614344/143‑1 (MQ=255)
                                                                       cAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGaa                                                                       >  2:27184/1‑143 (MQ=255)
                                                                              tttGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGGGGGGGGAGGATTACTCAGCGCTACGCGCTTCGCCCGTCGGGTCGTTGCCTGCGGCAACGCTATCTCGCTGGCACGCGAGGCGAACCTTGGt                                                                >  1:933037/1‑143 (MQ=17)
                                                                                 gATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGa                                                             >  2:218762/1‑143 (MQ=255)
                                                                                    ggCGGATTCGCCTGAGCGTTCAGGGGCTGTTGAAAGTGATGGTGGTGGGGGGAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGc                                                          <  1:449524/142‑1 (MQ=14)
                                                                                       ggATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTtc                                                       <  2:719363/143‑1 (MQ=255)
                                                                                       ggATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACATAGGTCGAAGCGtc                                                       >  2:375855/1‑143 (MQ=255)
                                                                                         aTTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTgctc                                                     >  2:161733/1‑143 (MQ=255)
                                                                                          ttCGCTTGAGTGGCCAGCGCCTTTTGAGAGTGATGGTTGGTGGGGAAGGATTGCCCCGCGCGGCGCGCTCCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCa                                                    <  1:242958/143‑1 (MQ=14)
                                                                                          ttCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCa                                                    <  2:605287/143‑1 (MQ=255)
                                                                                             gCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATcc                                                 >  2:640020/1‑143 (MQ=255)
                                                                                             gCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCACTTCGGGTTGTTGCTTGAGGAGTAGATTTCGCTCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCGTcc                                                 >  2:922753/1‑143 (MQ=17)
                                                                                             gCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGGGGGGGAAGGATTAGTCAGCGCTGAGCGCTTCGCCCTTGGGGTCGTTGCCTGCGGCAACGGCCGCTCGCTGGCGCTCGACGCGATCATTGGACTCAGAGTCTCATcc                                                 >  1:21754/1‑143 (MQ=14)
                                                                                                 gagaGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGCAGCTTCTCATCCTTcc                                             >  2:752207/1‑143 (MQ=255)
                                                                                                      ttCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCa                                        >  2:1076730/1‑143 (MQ=255)
                                                                                                       tCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCGGTTGGGGTCGTTGCCTGCGGCACCGCCCTCTCGCTGGCGCTTGGCGCGGACCCTCGTCGTCGGGGCTCATGCTTCCCCGcgg                                       >  1:867160/1‑141 (MQ=2)
                                                                                                         cggggcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCa                                                    >  1:762497/6‑128 (MQ=18)
                                                                                                         cggggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCa                                                    <  2:762497/127‑1 (MQ=25)
                                                                                                          gggggcgtggcgggtggtgGGGGTGGGGGAGGGATTGCTCGGCGCTGCGCGCTTCGGCCTGCGGGTCGTTGCCTGCGGCAGCGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                    <  1:1024330/130‑1 (MQ=11)
                                                                                                           ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGATGCTTCTCATCCCTCCCCGCATGGGc                                   >  2:239236/1‑143 (MQ=255)
                                                                                                           ggACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGc                                   <  2:1027342/143‑1 (MQ=40)
                                                                                                            gACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGGACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                  >  2:614315/1‑143 (MQ=255)
                                                                                                            gACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCCTGGTCGAAGCTTCTCATCCCTCCCCGCACGGGCa                                  >  1:1135825/1‑143 (MQ=255)
                                                                                                               ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGGTCCCTCGCTGGCGCGCGCGCGGAACGTGGGTCGAACGTCGTCATCCTCccccccggggccatga                               >  1:992417/1‑131 (MQ=11)
                                                                                                               ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGGCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGACAgga                               >  2:478699/1‑141 (MQ=255)
                                                                                                               ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGATTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGACCCTTGGTCGAAGCTTCCCACCCTTCCCCGCCTGGGCAgcg                               >  1:94512/1‑141 (MQ=11)
                                                                                                                    aaaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAttt                          >  2:274919/1‑143 (MQ=38)
                                                                                                                      aGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAAGATTTaa                        >  2:1184282/1‑143 (MQ=255)
                                                                                                                            ggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCgg                  <  1:171571/143‑1 (MQ=17)
                                                                                                                               ggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGACCCTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGTCAGCGTAGTTTATTGCGCAtt               >  2:607620/1‑143 (MQ=11)
                                                                                                                                   ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGtt           >  2:292899/1‑143 (MQ=38)
                                                                                                                                    gggAAGGATTACTCTGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTg          <  2:64852/143‑1 (MQ=255)
                                                                                                                                     ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTGGTCGAAGCTTCTCATCCTTcc                                             >  2:748336/1‑107 (MQ=17)
                                                                                                                                            ttACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAATAAATAGAGGATACAATGGGAAGTTc  >  2:367336/1‑143 (MQ=14)
                                                                                                                                             |                                                                                                                                             
CTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTC  >  NC_000913/1286943‑1287225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.