New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	3 (0.040)	111 (1.430)	71/280	0.0	97.4%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					intergenic (‑5/+146)	wbbL/insH1	pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator

TCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC  >  NC_000913/2101607‑2101887                                                                                                                                                |                                                                                                                                           tCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaag                                                                                                                                            <  2:1327001/143‑1 (MQ=255)  cTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGACCCGAAACATA‑TTGATATCAGAATAGATACTTTCTTTAGGAATTTTTGTATTGTTaagg                                                                                                                                           >  2:622914/1‑143 (MQ=255)   ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaagga                                                                                                                                          >  1:361984/1‑143 (MQ=255)   ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaagga                                                                                                                                          >  1:1073764/1‑143 (MQ=255)         gTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACAGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTgg                                                                                                                                    >  1:809278/1‑142 (MQ=255)          tACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCg                                                                                                                                   >  2:930647/1‑143 (MQ=255)          gaCATAAAGTAACCTTGATCGAAGCCATTTACTCGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCg                                                                                                                                   <  1:139944/142‑1 (MQ=255)             aTAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAAt                                                                                                                                >  2:1057023/1‑143 (MQ=255)                 actAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGc                                                                                                                            <  2:849009/141‑1 (MQ=255)                   tAACCTTGATCGAAGCCATTTACACTCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  1:582698/143‑1 (MQ=255)                   ataggctGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATACGCgg                                                                                                                          >  1:317475/7‑143 (MQ=255)                       cTTGATCGACGCCATTTACACGCACAAAAACCGAAAAACGTAACAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTGCTTTAGTAATTTCTGTGTTATTCAGGAAGGTGCGAATAAGCGGGGaa                                                                                                                      >  1:1108214/1‑143 (MQ=255)                       cTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCggggca                                                                                                                      >  2:163249/1‑141 (MQ=255)                       cTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGaa                                                                                                                      >  1:680697/1‑143 (MQ=255)                            tCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttct                                                                                                                 >  2:839128/1‑143 (MQ=255)                              gAAGCCATTTACCCACACACAATCTGAAAAACGTACCAGCATAAATGCTCCTGCGCACCAATGAACA‑ACCGTATCAGAATAGAGACTTTCTTTAGGAATTTTTGTTTTATTAAGGAACGTGCGAATAAGCGGGGAAAttcttc                                                                                                               <  2:681326/143‑1 (MQ=255)                              gAAGCCATTTACACGCACAAAATCTGAAAAAGGTACGCACATAAATGATCCTGCGCACCAATCAACA‑ACCCTATCAGAACAGATACGCTCGTTAGGAATTGTGTGTGTAGTAAGAAAGGTGCGAGTAAGCGGGGAAAttcttc                                                                                                               >  1:663854/1‑143 (MQ=255)                               aaGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATGCTGCGCACCAATCAACA‑ACCGTATCAGACTAGATACTTTCTCTAGGAATTTTTGTTTTATTGAGGGAGGTGCGGATAATTGGAGAATttctgtg                                                                                                              >  1:204920/1‑140 (MQ=255)                                 gCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAATGAAGGTGCGAATAAGCGTGGAATTTCTtctct                                                                                                            >  1:248180/1‑142 (MQ=255)                                 cccaactACACGCACATAATCTGAAAAACCTACCAACATAACTGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTGTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                                                            <  2:1330255/137‑1 (MQ=38)                                  ccATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                           >  1:28424/1‑143 (MQ=255)                                   cATTTACACGCACAAAATCTGAAAAACGTACCTGCATAAATGATCCTTCGCACCAATCAACA‑ACCATATCAGAATCGATACTTTCTTTAGGAATTTTTGTTTTATTAAGTAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc                                                                                                          <  1:1251510/143‑1 (MQ=39)                                    gtttACCCGTACAACATCTGAAAACCGTACTAGCATGAATGATCCTGTGTA‑CAATTAGTATAAAGTATCCGAATCGATACTTTCTTTAGGAATTTTTGTTTTATGTTTTTCGGTGCTAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                         <  1:663802/142‑1 (MQ=255)                                    aTTTACACGCACAAAATCTGAAAAACGTGGCAGCGTAAATGAGCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAACTTCTTCTCGGCt                                                                                                         >  1:1109446/1‑143 (MQ=39)                                    aTTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                         >  1:1182904/1‑143 (MQ=255)                                     tttACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                                                                        <  1:724398/143‑1 (MQ=255)                                      ttACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGTTGCGAATAAGAGGAGAAATTCTTCGCGGATGa                                                                                                       >  1:695547/1‑143 (MQ=255)                                      ttACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAACTCTTGTGTTAGTAGGGACGATTTTATTAAGCAGGGGAATTCTTCTCGGATGa                                                                                                       >  1:1013057/1‑143 (MQ=255)                                         cacGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTc                                                                                                    >  2:846124/1‑143 (MQ=255)                                          acGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                   <  2:471786/143‑1 (MQ=255)                                           cGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACTAATCAACT‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg                                                                                                  <  1:1244213/143‑1 (MQ=255)                                           cGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACGCAg                                                                                                  >  1:1101101/1‑143 (MQ=255)                                            gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                                 <  1:571841/143‑1 (MQ=255)                                            gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                                 <  2:1163938/143‑1 (MQ=255)                                            gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                                 <  1:571658/143‑1 (MQ=255)                                              agaaaaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAAGCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtca                                                                                               <  2:299003/141‑1 (MQ=255)                                              acaAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtca                                                                                               >  1:1052583/1‑143 (MQ=255)                                              acaAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtca                                                                                               >  1:1296226/1‑143 (MQ=255)                                                  aaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattgc                                                                                           >  2:346306/1‑141 (MQ=255)                                                  aaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGAGAATAAGCGAGGAAATTCTTCTAGGCTGACTCAGtaatttc                                                                                           >  1:72039/1‑143 (MQ=255)                                                    tCTGAAAAACGCACCAGCATAAATGAGCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                         <  2:285895/143‑1 (MQ=255)                                                     cTGAAAAACGTACCAGCATAAATGATCCTGCTCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt                                                                                        <  2:152542/143‑1 (MQ=255)                                                      tgcaaacCGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATCCCTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTcatttcattt                                                                                       <  2:1147465/140‑1 (MQ=255)                                                        aaaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGACTCAGCGGGGCAATTCTTCTCGGCTGACTCACTCATTGCATtcct                                                                                     >  1:767386/1‑143 (MQ=255)                                                         aaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                                                                    <  2:527791/143‑1 (MQ=255)                                                         aaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                                                                    <  1:1057023/143‑1 (MQ=255)                                                         aaaaCGAACCAGGATAAATGATCCTGCGCACCAATCAACC‑ACCGTATCAGAATAGATACGTTCTTTAGGAATTTTTGTTTTCGTAAGGAAGGTGCGAATAAGCGGGAAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                                                                    <  1:369208/143‑1 (MQ=25)                                                          aaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                                                                   >  1:687782/1‑143 (MQ=255)                                                          aaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                                                                   >  2:79373/1‑143 (MQ=255)                                                                aCCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTACGGAAGGTGCGAATAAGCGGGGCAATTCTTCTCGGCTGACTCACTCATTTCATCTCTTCATGttt                                                                             >  2:593459/1‑143 (MQ=255)                                                                aCCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCTGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                                                             <  1:566819/143‑1 (MQ=255)                                                                aCCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                                                             <  1:1351530/143‑1 (MQ=255)                                                                aCCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                                                             >  2:1161918/1‑143 (MQ=255)                                                                 ccAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                                                            <  1:295653/143‑1 (MQ=255)                                                                  cAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                           >  2:388343/1‑143 (MQ=255)                                                                        aaaTGATCCTGCGCACACATGAAAA‑ACCGTATCAGACTGAAACCAAACCACACTAATTTTTCTATTACTAAAGCAGCTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                                                                     <  2:302833/143‑1 (MQ=2)                                                                             aTCCGGCGCACCGATCAACA‑GCCGTATCAGAATAGATCCGTTCTTTAGGAATTTCTGTCGTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                                                                <  1:1025740/143‑1 (MQ=18)                                                                              tCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCCTTAGTAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                               <  1:955197/143‑1 (MQ=255)                                                                               ccTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                              >  1:1146498/1‑143 (MQ=255)                                                                                cTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc                                                             <  2:1213729/143‑1 (MQ=255)                                                                                  gcgcACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                                                           >  2:104162/1‑143 (MQ=255)                                                                                     cACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCATa                                                        <  2:384130/143‑1 (MQ=255)                                                                                      aCCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                       >  2:1152520/1‑143 (MQ=255)                                                                                       ccAATCAACA‑ACCGTATCAGAATAGATACGTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTGTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa                                                      <  1:707034/143‑1 (MQ=255)                                                                                        cAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCTTGTTTGAGCCGATTTTTTCTCCCGTAAAt                                                     >  1:712624/1‑143 (MQ=255)                                                                                          aTCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTTTTAAGTAAGTTGCGAATAAGTGTGGTTATTTTTCTCGGCTGTTTCAGTCATTTTATTTTTTCATTTTTGTTCCGTTTTTTTCTCCCGTATATGc                                                   >  1:1150277/1‑143 (MQ=255)                                                                                             aaca‑acCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                                <  2:28424/143‑1 (MQ=255)                                                                                                a‑acCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                             <  1:930647/143‑1 (MQ=255)                                                                                                    aggagcAGAATGGAGACGTTCTTTAGGAAGTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCGCGGCGGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTGTTTCTCCCGTAAATGCCTTGAATCa                                          <  1:381301/138‑1 (MQ=17)                                                                                                      tATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTCCGAATACGCGGGGAAATTCTTCTCGGCTGACTCAGTCCTTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGTATCAGc                                        >  2:664205/1‑143 (MQ=255)                                                                                                          aGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAt                                    <  2:317475/143‑1 (MQ=255)                                                                                                           gAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGTCTGACTCAGTCAGTTCATTTGTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCATCCTCtt                                   >  2:718190/1‑143 (MQ=18)                                                                                                           gAATAGATACTTTCTCTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt                                   <  2:616552/143‑1 (MQ=255)                                                                                                                   aCTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGt                           >  2:813834/1‑143 (MQ=255)                                                                                                                    gtttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGtt                          <  1:944913/142‑1 (MQ=255)                                                                                                                          ttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                    <  1:388343/143‑1 (MQ=255)                                                                                                                             ggAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTCAATCAGCCTATTTAGACCGCTTCTTCGccc                 >  1:622571/1‑142 (MQ=255)                                                                                                                              taaTTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAt                <  2:809278/142‑1 (MQ=255)                                                                                                                                  ttttGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTaa            <  1:1152520/143‑1 (MQ=38)                                                                                                                                   tttGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCAATTTAAg           >  2:905297/1‑143 (MQ=38)                                                                                                                                    ttGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgg          <  2:839953/143‑1 (MQ=37)                                                                                                                                    ttGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATATAAgg          <  2:361984/143‑1 (MQ=37)                                                                                                                                     tGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGc         <  2:726353/143‑1 (MQ=35)                                                                                                                                     tGTCTTATTTAGGCAGTGCCGAATAAGCGCGTATATTCTTCTGTGCTGTCTCAGTCCTTGCATTTCTTCACACTAAATCCGATTGTTTCTTCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGc         <  1:1250048/143‑1 (MQ=2)                                                                                                                                      gTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg        <  2:1265719/143‑1 (MQ=35)                                                                                                                                       ttttATTAAGGAAGGTGCGAATAAGCGGGGAGATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCTTATTTATTCGGTATCTTCGTCATTTAAAGCGt       >  2:337562/1‑143 (MQ=11)                                                                                                                                       tttgATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTCTTCTCCCGTAAATGCCTTGAATCAGCCTAGTTAGACCGTTTCTTCGCCACTTCAGGCga       >  1:588323/1‑142 (MQ=11)                                                                                                                                        tttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCCGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAAACCGTTTCTTCGCCATTTTAGGCGtt      >  2:458828/1‑143 (MQ=16)                                                                                                                                            ttaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATct  >  1:937021/1‑142 (MQ=11)                                                                                                                                                |                                                                                                                                           TCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACA‑ACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC  >  NC_000913/2101607‑2101887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.