Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 62 [0] [0] 63 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)58 (0.790) 48/264 0.5 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257768‑258049
                                                                                                                                           |                                                                                                                                              
ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                             <  2:1102987‑M1/143‑4 (MQ=255)
ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAAAGACGTTACAGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                             >  2:570073‑M1/1‑140 (MQ=255)
  aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGCGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgc                                                                                                                                           >  1:1111264‑M1/1‑138 (MQ=255)
   aaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGCTTGGACACCCGATGAGCAGATTGATCAAAAAATTTACAGCACTAGGCCCGTCTATTCATAAAGTTAagagcc                                                                                                                                          >  2:1122388‑M1/1‑137 (MQ=255)
    aaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa                                                                                                                                         >  2:771556‑M1/1‑136 (MQ=255)
           cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACATGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTGGTGAAGGTAagtgaccagctatt                                                                                                                                  >  1:1299070‑M1/1‑129 (MQ=255)
           cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGGGAGGGTAagtgcaaggataat                                                                                                                                  >  2:1170232‑M1/1‑129 (MQ=255)
            tAAGTTTTGGCAATTTGGCAGAACAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGCTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatactc                                                                                                                                 <  1:301380‑M1/143‑16 (MQ=255)
               aTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                              <  2:646773‑M1/143‑19 (MQ=255)
               aTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACAACCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                              >  2:850428‑M1/1‑125 (MQ=255)
                     ccAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt                                                                                                                        <  2:535810‑M1/143‑25 (MQ=255)
                        aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGCAGAGCAGCTGGATCAAAAGAACATCGGCTCGATGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                     <  1:286970‑M1/143‑28 (MQ=255)
                              tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGGGCAAAAAATTTACCGCACGAGGGCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                               <  2:1056062‑M1/143‑34 (MQ=255)
                                 aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                            >  2:1009726‑M1/1‑107 (MQ=255)
                                 aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                            <  1:964176‑M1/143‑37 (MQ=255)
                                 aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                            <  2:13859‑M1/143‑37 (MQ=255)
                                   cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                          <  2:777239‑M1/143‑39 (MQ=255)
                                    aGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCCGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcggttgtcttgctg                                                                                                         >  2:281770‑M1/1‑104 (MQ=255)
                                           tcagcacagcagaTAGCAATGACGTTACCGAGTGAACACCCGAAGAGCAGAGTGATCAAAAAACTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgt                                                                                                  <  2:123376‑M1/138‑47 (MQ=255)
                                           tCACAACAGGAGATAGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt                                                                                                  <  2:433291‑M1/143‑47 (MQ=255)
                                               aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              >  1:158543‑M1/1‑93 (MQ=255)
                                               aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGAAGGAGCAAAAAATTGACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              <  2:456942‑M1/143‑51 (MQ=255)
                                               aacaGGAGATAGCAATGACGTGACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              <  2:438504‑M1/143‑51 (MQ=255)
                                               aacaGGAGAAAGCAATGACGTTAGCGGGTGGAGACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              <  2:363191‑M1/143‑51 (MQ=255)
                                                      tatAGCAATGGCGTTACCGGTTGCGCACGCGAAGAGCAGATTGATCAAAAAATTTACCGCACTATGCCCGTATATTCGTGAAGGGAagtgcatagataatcgattctttttcgattgtcgggctgtatgcgtcaacgtgaaac                                                                                       <  1:541513‑M1/142‑58 (MQ=255)
                                                      gaTAGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGTCCTAGGCCCGTATATCCGTGAAGGTAagtgcaaagatactcgatcctcctgcggttgtctggctgtatgcgtcaacgtgaaac                                                                                       <  1:665315‑M1/143‑58 (MQ=255)
                                                        tAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtccgggtgtatgcgtcaacgtgcaaccg                                                                                     >  1:1063290‑M1/1‑84 (MQ=255)
                                                            aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGAACTAGGCCCGTATATTAGTGAAGGTAagtgcaaagataatcgcttctttttcgattgtctggctgtagtcgtccacgagaaacgggcaa                                                                                 >  1:121789‑M1/1‑80 (MQ=255)
                                                             aTGACTTTACCGAGTGAACACCCGAAGAGCAGATTGATCAAAAAATGTGCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc                                                                                <  2:510892‑M1/143‑65 (MQ=255)
                                                                 cGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                            <  2:398978‑M1/143‑69 (MQ=255)
                                                                      ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcg                                                                       >  2:92763‑M1/1‑70 (MQ=255)
                                                                       cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                      >  2:402807‑M1/1‑69 (MQ=255)
                                                                       cGAGGGGACACCCGGAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagggcaaagataagcgatgcttgttcgatggtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                      <  1:731135‑M1/143‑75 (MQ=255)
                                                                        gAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaacccggcaccgcaagtacgtg                                                                     >  2:1266642‑M1/1‑68 (MQ=255)
                                                                               cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                              <  1:1009726‑M1/143‑83 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacccgcaccggaagtgcgtgaattctgggg                                                           >  2:76555‑M1/1‑58 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                    >  2:248308‑M1/1‑58 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                    <  1:248308‑M1/86‑29 (MQ=255)
                                                                                    gAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggct                                                         >  2:1107888‑M1/1‑56 (MQ=255)
                                                                                             aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggccccggaagtgcgtgaatcctggggctgctggatgg                                                >  1:1228437‑M1/1‑47 (MQ=255)
                                                                                               tgctcaaAAAATTTACCTCACTAGGCCCGTATATTCGTGAAGGTAagtccaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag                                              <  2:1003221‑M1/140‑99 (MQ=255)
                                                                                               tGATCAAAAAATTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag                                              <  2:1246227‑M1/143‑99 (MQ=255)
                                                                                                 aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggccccggcagtgcgtcacttctcgcgctggcggagggagct                                            >  1:1142021‑M1/1‑43 (MQ=255)
                                                                                                 aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                            <  2:755255‑M1/143‑101 (MQ=255)
                                                                                                  tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                           >  2:421263‑M1/1‑42 (MQ=255)
                                                                                                    aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgcgtgtgtggcggtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagcggga                                         >  1:655979‑M1/1‑40 (MQ=255)
                                                                                                    aaaaaaTGTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggaggatggagctgga                                         >  1:31311‑M1/1‑40 (MQ=255)
                                                                                                          gttaCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattttctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                   <  1:1089635‑M1/142‑110 (MQ=255)
                                                                                                             aCCGCACTCGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcagga                                <  2:580507‑M1/143‑113 (MQ=255)
                                                                                                                  aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccc                           >  1:1246627‑M1/1‑26 (MQ=255)
                                                                                                                    tAGGTCCGTTTATTCTTTAAGGTAtgtgcaaagattatcgattctttttcgattgtctggctgtatgcgtcaacgggaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                         <  2:236302‑M1/143‑120 (MQ=255)
                                                                                                                        cccGTATATTCGTGACGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggacgtgcgtgaattctggggctggtggatggagccggcagcgcaggactcccgttttc                     >  2:68513‑M1/1‑20 (MQ=255)
                                                                                                                         gcttatattaGTGAAGGTAagtacaaagattaacgattattttttgattgtctggctttatgcgtcaaagtgaaaccggcaccggaagtgcgtgaattctggcgctggtggatggagctttaagcgcaggaatcccgttttac                    <  1:1146710‑M1/140‑125 (MQ=255)
                                                                                                                            tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                 <  2:862016‑M1/143‑128 (MQ=255)
                                                                                                                              tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca               <  1:690308‑M1/143‑130 (MQ=255)
                                                                                                                              tatTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                     <  1:182780‑M1/41‑28 (MQ=255)
                                                                                                                              tatTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                     >  2:182780‑M1/1‑14 (MQ=255)
                                                                                                                                ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaggcgcaggaatcccgttttacttacagt             >  2:1143323‑M1/1‑12 (MQ=255)
                                                                                                                                    tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgtaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaataccgttttacctacagttacc         >  1:444655‑M1/1‑8 (MQ=255)
                                                                                                                                        ggTAagtgcaaagataatcgatcctttttcgattgtctggctgtatacgtcaacgtgaaaccggcaccggaagtgcgtgaattctgtggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtt     <  1:54526‑M1/143‑140 (MQ=255)
                                                                                                                                          gaagtgcaaagatactccattctcttgcgcttgtctggctgtaggcgtcaacgggaacccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg   <  1:1170232‑M1/142‑142 (MQ=255)
                                                                                                                                           aagggcaaagataatcgattctttttcgattgtctggcggtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttgg  <  2:1109802‑M1/143‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                              
TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257768‑258049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: