New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 22874443 (0.690)9 (0.150) 5/270 8.0 17.9% intergenic (+82/‑12) rrlH/rrfH 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
?NC_000913 2726222 = NA (NA)intergenic (‑36/+57) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAA  >  NC_000913/228602‑228883
                                                                                                                                              |                                                                                                                                           
gtgcgtATGTGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATACTCAGCGTGATACAGATTAAAGCAGAACGCGGAAGCGGGCCGAt                                                                                                                                             >  2:728340/1‑143 (MQ=11)
  gtgtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaa                                                                                                                                           <  1:310295/143‑1 (MQ=32)
    tgaaGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaaa                                                                                                                                         <  1:594675/141‑1 (MQ=17)
      aaGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACa                                                                                                                                       >  1:978288/1‑143 (MQ=32)
        gtgcAGCGATGCGTTGAGTTGACCGGTACTAATGAACCGTGAGGATTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGa                                                                                                                                     <  1:54071/141‑1 (MQ=12)
        gcgcAGCGAAGCGTTGAGCTAACCGGTACTAATGAACCGTGACGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGa                                                                                                                                     <  1:900110/143‑1 (MQ=17)
         cgcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCGGAACGCAGAAGCGGTCTGATAAAACAGaa                                                                                                                                    >  2:1086377/1‑143 (MQ=17)
               gATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGCGAGAGGACGTTCAGCCTGCTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGcc                                                                                                                              >  1:148808/1‑143 (MQ=11)
               gATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGcc                                                                                                                              <  2:814415/143‑1 (MQ=32)
                aTGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCt                                                                                                                             <  1:814164/143‑1 (MQ=32)
                    gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGTTTGAGAGAAGATTTTGGGCTGGACACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcg                                                                                                                         >  1:248743/1‑143 (MQ=11)
                        aGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCg                                                                                                                     >  1:930302/1‑143 (MQ=34)
                          cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTa                                                                                                                   <  2:1045161/143‑1 (MQ=34)
                          cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGATTTGGCGGATTGAGAGAATATTTTCAGCCTGATACAGATTAAATCAGACCGCAGAAGCGGCCTGATAAAACAGAATTTGCCTGGCCGCCGtc                                                                                                                   >  2:1006735/1‑142 (MQ=11)
                           tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAg                                                                                                                  >  1:422696/1‑143 (MQ=34)
                               cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAAcgcg                                                                                                              >  1:1030403/1‑143 (MQ=21)
                                     tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGACTTTGCCTGGCGGCCGAAGCGCggtggga                                                                                                        >  2:46973/1‑141 (MQ=19)
                                     tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc                                                                                                        >  1:44742/1‑143 (MQ=34)
                                         gAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAc                                                                                                    <  1:576714/143‑1 (MQ=34)
                                         gAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAc                                                                                                    >  1:768906/1‑143 (MQ=34)
                                          aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATGTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCCGTGGTCCCAcc                                                                                                   >  1:531520/1‑143 (MQ=21)
                                              gcgAGGCTTAACCCTACAACGCCGAAGTTGTTGTGGCGGATTGAGACAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATGTGTCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAc                                                                                               <  2:237615/141‑1 (MQ=11)
                                                   gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTGAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAAGAGAATTTGCCTGGCGGGCGTAGCGCGGTGGTCGCACGTGACACCAt                                                                                          >  1:1060584/1‑143 (MQ=11)
                                                   gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCAt                                                                                          <  1:919589/143‑1 (MQ=34)
                                                    cTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGCGGAAACCGAATTTGCCTCGCGGCCGTAGCCCGGTGCCCCCACCTGCCCCCATg                                                                                         >  1:1067789/1‑143 (MQ=11)
                                                     ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGc                                                                                        <  2:1083427/143‑1 (MQ=34)
                                                     ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGc                                                                                        <  1:241282/143‑1 (MQ=34)
                                                     ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGc                                                                                        <  2:503780/143‑1 (MQ=34)
                                                              cAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTGAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAg                                                                               <  2:770366/143‑1 (MQ=21)
                                                              cAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAg                                                                               >  1:20121/1‑143 (MQ=34)
                                                                aCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                             <  1:817652/143‑1 (MQ=34)
                                                                aCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                             <  1:181274/143‑1 (MQ=34)
                                                                    cggaGCTGTTTTGGCGGATTGAGAGAAGATCTTCAGCCTGATACAGAGTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGa                                                                         <  1:678070/140‑1 (MQ=255)
                                                                    cGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGa                                                                         <  1:951151/143‑1 (MQ=34)
                                                                      aaGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAAGCAGAACGCAGAAGCGGTGTGATAAATCAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaaa                                                                       <  2:123929/143‑1 (MQ=255)
                                                                       cgccgttttttcagATTGTGAGTAGGTCTTCAGCCTGATACAGATCAAATCACAACGCAGAAGCGGTCTGATAAAACAGAATCTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTTAAAc                                                                      <  2:671773/130‑1 (MQ=11)
                                                                        gCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTAAGAAGTGAAACg                                                                     >  1:322402/1‑143 (MQ=18)
                                                                                   ggATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAAACCAGAAGAGAAACGCCGGAGAGCCg                                                          >  2:116841/1‑143 (MQ=11)
                                                                                     aTTGAGAGAAGCTTTTCAGCCGGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATGTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAt                                                        <  1:84219/143‑1 (MQ=9)
                                                                                      ttGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATg                                                       >  2:528738/1‑143 (MQ=11)
                                                                                                acttccAGCCTGATACAGATTAAATCAGAACGCAGACGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGTTAGTGTggg                                             <  2:275923/138‑1 (MQ=0)
                                                                                                                              cgcgggaGCGGTGGGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCa               <  2:94973/137‑1 (MQ=0)
                                                                                                                                       ggtcgtaTAACACAGTCTTTGCCTGGCGGCCGCAGCGCGGTGTTGCCACCTGACCCCATGCCGCACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCaaa      <  2:416460/137‑1 (MQ=1)
                                                                                                                                           tGATAAATCCGAATTTGCCTGGCGGCCGTAGCGCGGTGTTCCGACCTGGCCCCATGCCGCACCCAGAAGTGCCGCCTCGTAGCGCCGATGTTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTaa  <  2:292215/143‑1 (MQ=11)
                                                                                                                                              |                                                                                                                                           
GTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAA  >  NC_000913/228602‑228883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.